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Report for CCDS2962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2962.1 Public Homo sapiens 3 PHLDB2 24 110 108 CCDS HistoryNCBI Gene:90102Re-query CCDS DB by CCDS ID:2962.1Re-query CCDS DB by GeneID:90102See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000412622.5 ENSP00000405292.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000412622.5Link to Ensembl Protein Viewer:ENSP00000405292.1Re-query CCDS DB by Nucleotide ID:ENST00000412622Re-query CCDS DB by Protein ID:ENSP00000405292
Original member Current member EBI ENST00000481953.5 ENSP00000418319.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000481953.5Link to Ensembl Protein Viewer:ENSP00000418319.1Re-query CCDS DB by Nucleotide ID:ENST00000481953Re-query CCDS DB by Protein ID:ENSP00000418319
Original member Current member NCBI NM_145753.2 NP_665696.1 Accepted alive Link to Nucleotide Sequence:NM_145753.2Link to Protein Sequence:NP_665696.1Re-query CCDS DB by Nucleotide ID:NM_145753Re-query CCDS DB by Protein ID:NP_665696Link to BLAST:NP_665696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665696.1 1210 Q86SQ0-2 1210 100% 0 0

Chromosomal Locations for CCDS 2962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 111884078 111885412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111913319 111913702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111919072 111919215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111920282 111920419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111939475 111939630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111940535 111940645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111945268 111945357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111948932 111949075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111952572 111952712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111953930 111954029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111962108 111962312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111966613 111966703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111967678 111967824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111969690 111969909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111973732 111973817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 111974423 111974563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3633 nt):
ATGGAAGAGCATAGCTACATACAAAAGGAGCTAGATTTACAAAATGGTAGCTTAGAGGAAGACTCTGTGG
TGCATTCTGTTGAGAACGATTCCCAAAACATGATGGAGAGCCTCAGCCCAAAGAAATACTCTTCCAGTCT
GAGATTTAAAGCCAATGGAGACTATTCTGGCTCCTATTTAACCCTCTCACAACCTGTGCCTGCAAAGAGA
AGCCCTTCTCCTTTGGGAACCAGTGTCAGAAGCAGCCCCTCCTTAGCCAAAATCCAGGGAAGCAAGCAGT
TCTCTTATGATGGAACTGACAAAAATATTCCTATGAAACCTCCAACTCCTTTACTCAACACTACATCCTC
CCTCAGTGGATATCCACTTGGAAGAGCAGACTTTGATCATTATACTGGCCGGGACAGTGAAAGGGCCTTG
AGGCTCTCAGAGAAGCCTCCCTATTCCAAATATAGCTCAAGGCATAAATCGCATGACAATGTCTACTCTC
TTGGAGGGCTGGAAGGTCGGAAGGCATCTGGCTCGCTCCTGGCCATGTGGAATGGAAGTTCCCTGAGTGA
TGCTGGCCCGCCTCCTATCAGCAGATCGGGAGCCGCAAGCATGCCTTCAAGCCCAAAGCAAGCCAGGAAA
ATGAGCATTCAGGACAGCCTGGCGCTTCAACCCAAGTTAACTAGACACAAGGAGCTTGCATCTGAAAACA
TCAATTTGAGAACTAGGAAGTACTCCAGCAGCAGCCTGAGTCACATGGGAGCCTACAGCCGATCACTTCC
CAGGTTGTACAGAGCCACAGAGAACCAGCTGACACCTCTCAGCTTGCCTCCAAGAAACTCTCTGGGCAAT
TCCAAACGAACAAAACTTGGGGAAAAGGATCTACCTCATAGCGTAATAGACAATGACAATTACCTTAATT
TTTCTTCTTTGAGCTCAGGGGCTTTACCCTATAAAACCTCTGCTTCTGAAGGCAATCCTTATGTAAGTTC
TACCCTCAGTGTCCCTGCCAGTCCACGAGTGGCTCGGAAGATGCTTCTGGCCTCCACCTCCTCCTGTGCC
TCTGATGACTTTGATCAGGCTTCATATGTGGGGACAAACCCGAGTCATTCACTTCTTGCTGGAGAGTCAG
ACAGAGTTTTTGCGACCAGGAGGAACTTCTCTTGTGGATCTGTGGAATTTGATGAGGCAGATTTGGAAAG
CCTCAGACAGGCCTCAGGAACCCCCCAGCCTGCCCTTCGGGAACGGAAAAGCAGTATTAGCTCCATTTCA
GGACGTGATGACCTGATGGATTATCACCGGCGGCAGAGGGAGGAAAGACTCAGGGAGCAGGAAATGGAGC
GATTGGAGAGACAGCGTCTGGAGACCATCCTCAGTCTCTGTGCTGAATACACAAAGCCTGACAGTCGCTT
ATCTACTGGGACCACCGTGGAAGATGTGCAGAAAATCAACAAGGAGCTTGAGAAGCTGCAGCTCTCTGAT
GAGGAGTCTGTGTTTGAGGAAGCCCTCATGAGCCCTGACACAAGATACAGGTGCCACCGGAAAGACTCCC
TCCCTGATGCAGACTTGGCAAGCTGTGGGAGTCTCAGTCAGAGCAGTGCCAGCTTCTTTACCCCCAGGAG
CACCAGGAATGATGAACTACTCAGTGACCTCACCCGGACTCCTCCACCACCATCCTCCACCTTTCCGAAA
GCTTCCAGCGAGTCCTCTTATCTAAGTATCCTACCAAAGACCCCAGAGGGTATAAGTGAAGAACAGAGAT
CTCAGGAGTTGGCTGCAATGGAAGAAACCCGGATAGTCATTCTGAACAACCTCGAGGAACTTAAGCAAAA
AATCAAAGACATAAATGATCAGATGGATGAGTCTTTCAGAGAGTTGGATATGGAATGTGCTCTTTTGGAT
GGAGAACAGAAATCTGAAACAACTGAACTTATGAAGGAGAAGGAGATTTTGGATCATCTAAACCGGAAAA
TAGCTGAACTGGAAAAGAACATTGTTGGTGAAAAGACCAAGGATGCTGACCTGTTGGATGTTGAAAGCAA
ACACTTTGAAGACCTGGAGTTCCAGCAGCTTGAACATGAGAGCCGTCTAGATGAAGAAAAGGAGAACTTG
ACTCAACAGCTCCTGCGTGAAGTTGCTGAATATCAACGGAACATCGTTTCTAGAAAGGAAAAAATTTCTG
CATTGAAAAAGCAAGCCAATCACATTGTTCAGCAGGCTCAGAGAGAGCAAGATCATTTTGTGAAAGAAAA
GAATAATTTAATAATGATGTTGCAAAGAGAAAAGGAGAATCTTTGTAATTTGGAAAAGAAATACTCCAGC
CTCTCTGGGGGGAAAGGGTTTCCCGTTAACCCCAATACTTTAAAAGAGGGCTATATCAGTGTAAATGAGA
TTAATGAGCCGTGTGGCAATTCCACGAATCTATCCCCTTCCACTCAGTTTCCTGCTGATGCTGATGCTGT
TGCCACTGAGCCTGCCACAGCTGTGCTGGCGAGCCAGCCACAGAGTAAAGAGCACTTTAGAAGTCTGGAA
GAAAGGAAAAAACAGCATAAAGAAGGCCTCTATCTGAGTGATACTTTGCCTCGAAAGAAAACCACATCTT
CCATCTCCCCACATTTCAGCAGTGCTACTATGGGGAGAAGCATCACCCCAAAGGCCCATCTGCCCCTAGG
ACAGAGTAACAGCTGTGGAAGTGTGCTCCCTCCCTCACTGGCAGCCATGGCCAAAGACTCAGAATCTCGG
AGGATGCTCAGAGGTTATAATCACCAACAGATGAGTGAAGGACACAGGCAGAAATCTGAATTTTATAACC
GCACAGCATCTGAATCAAATGTCTACTTGAATAGTTTCCATTATCCAGATCACAGCTACAAGGACCAGGC
CTTTGATACTCTGAGCCTCGATAGCTCTGATAGCATGGAGACCAGCATCTCTGCTTGCTCACCAGACAAC
ATCTCTAGTGCCAGCACTTCAAATATTGCTAGAATAGAAGAAATGGAGAGACTTTTGAAGCAGGCTCATG
CAGAAAAGACGCGGCTGCTCGAATCCAGGGAACGGGAAATGGAAGCCAAAAAACGAGCCCTGGAAGAAGA
AAAACGACGCCGGGAAATCCTGGAAAAACGATTACAGGAAGAAACTAGCCAGAGGCAGAAGTTAATAGAA
AAGGAAGTAAAAATAAGGGAGAGACAAAGGGCACAGGCTCGTCCTTTGACACGCTACCTGCCTGTCCGGA
AGGAAGACTTTGATTTGCGGAGCCATGTAGAGACTGCTGGCCACAATATTGACACCTGTTACCATGTATC
AATCACAGAGAAGACCTGCCGAGGATTCCTCATCAAAATGGGTGGGAAAATTAAAACGTGGAAAAAACGT
TGGTTTGTTTTTGATCGGAACAAGCGAACATTCTCTTATTATGCAGACAAGCATGAAACTAAATTGAAAG
GAGTAATATACTTTCAAGCCATTGAAGAAGTCTATTATGATCACCTCAAGAATGCTAATAAGAGTCCTAA
TCCGTTACTCACCTTTAGCGTCAAGACTCATGACAGAATCTATTATATGGTAGCCCCATCGCCAGAAGCC
ATGCGGATCTGGATGGATGTTATAGTTACGGGGGCAGAAGGTTACACTCACTTCTTGTTGTAG

Translation (1210 aa):
MEEHSYIQKELDLQNGSLEEDSVVHSVENDSQNMMESLSPKKYSSSLRFKANGDYSGSYLTLSQPVPAKR
SPSPLGTSVRSSPSLAKIQGSKQFSYDGTDKNIPMKPPTPLLNTTSSLSGYPLGRADFDHYTGRDSERAL
RLSEKPPYSKYSSRHKSHDNVYSLGGLEGRKASGSLLAMWNGSSLSDAGPPPISRSGAASMPSSPKQARK
MSIQDSLALQPKLTRHKELASENINLRTRKYSSSSLSHMGAYSRSLPRLYRATENQLTPLSLPPRNSLGN
SKRTKLGEKDLPHSVIDNDNYLNFSSLSSGALPYKTSASEGNPYVSSTLSVPASPRVARKMLLASTSSCA
SDDFDQASYVGTNPSHSLLAGESDRVFATRRNFSCGSVEFDEADLESLRQASGTPQPALRERKSSISSIS
GRDDLMDYHRRQREERLREQEMERLERQRLETILSLCAEYTKPDSRLSTGTTVEDVQKINKELEKLQLSD
EESVFEEALMSPDTRYRCHRKDSLPDADLASCGSLSQSSASFFTPRSTRNDELLSDLTRTPPPPSSTFPK
ASSESSYLSILPKTPEGISEEQRSQELAAMEETRIVILNNLEELKQKIKDINDQMDESFRELDMECALLD
GEQKSETTELMKEKEILDHLNRKIAELEKNIVGEKTKDADLLDVESKHFEDLEFQQLEHESRLDEEKENL
TQQLLREVAEYQRNIVSRKEKISALKKQANHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKKYSS
LSGGKGFPVNPNTLKEGYISVNEINEPCGNSTNLSPSTQFPADADAVATEPATAVLASQPQSKEHFRSLE
ERKKQHKEGLYLSDTLPRKKTTSSISPHFSSATMGRSITPKAHLPLGQSNSCGSVLPPSLAAMAKDSESR
RMLRGYNHQQMSEGHRQKSEFYNRTASESNVYLNSFHYPDHSYKDQAFDTLSLDSSDSMETSISACSPDN
ISSASTSNIARIEEMERLLKQAHAEKTRLLESREREMEAKKRALEEEKRRREILEKRLQEETSQRQKLIE
KEVKIRERQRAQARPLTRYLPVRKEDFDLRSHVETAGHNIDTCYHVSITEKTCRGFLIKMGGKIKTWKKR
WFVFDRNKRTFSYYADKHETKLKGVIYFQAIEEVYYDHLKNANKSPNPLLTFSVKTHDRIYYMVAPSPEA
MRIWMDVIVTGAEGYTHFLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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