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Report for CCDS5841.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5841.1 Public Homo sapiens 7 FAM180A 24 110 108 CCDS HistoryNCBI Gene:389558Re-query CCDS DB by CCDS ID:5841.1Re-query CCDS DB by GeneID:389558See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 5841.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000338588.8 ENSP00000342336.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000338588.8Link to Ensembl Protein Viewer:ENSP00000342336.3Re-query CCDS DB by Nucleotide ID:ENST00000338588Re-query CCDS DB by Protein ID:ENSP00000342336
Original member Current member EBI ENST00000415751.1 ENSP00000395467.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000415751.1Link to Ensembl Protein Viewer:ENSP00000395467.1Re-query CCDS DB by Nucleotide ID:ENST00000415751Re-query CCDS DB by Protein ID:ENSP00000395467
Original member Current member EBI ENST00000444083.5 ENSP00000406553.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000444083.5Link to Ensembl Protein Viewer:ENSP00000406553.1Re-query CCDS DB by Nucleotide ID:ENST00000444083Re-query CCDS DB by Protein ID:ENSP00000406553
Original member Current member NCBI NM_001369697.2 NP_001356626.1 Accepted alive Link to Nucleotide Sequence:NM_001369697.2Link to Protein Sequence:NP_001356626.1Re-query CCDS DB by Nucleotide ID:NM_001369697Re-query CCDS DB by Protein ID:NP_001356626Link to BLAST:NP_001356626.1
Original member Current member NCBI NM_205855.4 NP_995327.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_205855.4Link to Protein Sequence:NP_995327.1Re-query CCDS DB by Nucleotide ID:NM_205855Re-query CCDS DB by Protein ID:NP_995327Link to BLAST:NP_995327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356626.1 173 Q6UWF9 173 100% 0 0
NP_995327.1 173 Q6UWF9 173 100% 0 0

Chromosomal Locations for CCDS 5841.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 135733975 135734319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135737099 135737199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 135748505 135748580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGCATTGGAAGATGTTGCTGCTTCTGCTGTTGTATTACAATGCTGAGGCTTCTATGTGCCACAGGTGGA
GCAGGGCTGTGCTCTTCCCTGCCGCCCACCGGCCAAAGAGGTCCTCATCACTGCCATTGAACCCAGTCCT
GCAGACCTCCCTGGAGGAGGTGGAGCTGCTCTACGAGTTCCTGCTGGCCGAACTTGAGATCAGCCCTGAC
CTGCAGATCTCCATCAAGGACGAGGAGCTGGCCTCCTTGCGGAAGGCCTCAGACTTCCGCACCGTCTGCA
ACAACGTCATCCCCAAGAGCATCCCAGACATCCGCCGGCTCAGCGCCAGCCTCTCCAGCCACCCTGGCAT
CCTCAAGAAAGAAGACTTTGAAAGGACAGTGCTGACCCTGGCCTACACAGCCTACCGCACAGCCCTGTCC
CACGGCCATCAGAAGGACATCTGGGCGCAGTCCCTCGTTAGCCTCTTCCAGGCCCTGAGGCACGACTTGA
TGCGCTCCTCACAGCCGGGAGTACCTCCCTGA

Translation (173 aa):
MHWKMLLLLLLYYNAEASMCHRWSRAVLFPAAHRPKRSSSLPLNPVLQTSLEEVELLYEFLLAELEISPD
LQISIKDEELASLRKASDFRTVCNNVIPKSIPDIRRLSASLSSHPGILKKEDFERTVLTLAYTAYRTALS
HGHQKDIWAQSLVSLFQALRHDLMRSSQPGVPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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