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Report for CCDS61170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61170.1 Public Homo sapiens 12 B4GALNT1 24 110 108 CCDS HistoryNCBI Gene:2583Re-query CCDS DB by CCDS ID:61170.1Re-query CCDS DB by GeneID:2583See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61170.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000418555.6 ENSP00000401601.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000418555.6Link to Ensembl Protein Viewer:ENSP00000401601.2Re-query CCDS DB by Nucleotide ID:ENST00000418555Re-query CCDS DB by Protein ID:ENSP00000401601
Original member Current member NCBI NM_001276468.2 NP_001263397.1 Accepted alive Link to Nucleotide Sequence:NM_001276468.2Link to Protein Sequence:NP_001263397.1Re-query CCDS DB by Nucleotide ID:NM_001276468Re-query CCDS DB by Protein ID:NP_001263397Link to BLAST:NP_001263397.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263397.1 478 Q00973-2 478 100% 0 0

Chromosomal Locations for CCDS 61170.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57626744 57626961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57627618 57627858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57628122 57628262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57628713 57628903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57629048 57629146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57630152 57630332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57630478 57630518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57630980 57631086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57631915 57632132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTGGCTGGGCCGCCGGGCCCTGTGCGCTCTGGTCCTTCTGCTCGCCTGCGCCTCGCTGGGGCTCCTGT
ACGCGAGCACCCGGGACGCGCCCGGCCTCCGGCTACCTCTTGCGCCGTGGGCGCCCCCGCAAAGCCCCCG
CAGGCCCGAGCTGCCAGATCTTGCTCCTGAGCCCCGCTACGCACACATCCCGGTCAGGATCAAGGAGCAA
GTAGTGGGGAGCCAGTCCCCAGCTGACCAGCTGCTCATAGCCCCTGCCAACTCCCCGCTCCAGTACCCCC
TACAGGGTGTGGAAGTTCAGCCCCTCAGGAGCATCTTGGTGCCAGGGCTGAGCCTTCAGGCAGCTTCTGG
TCAGGAGGTATACCAGGTGAACCTGACTGCCTCCCTAGGCACCTGGGACGTGGCAGGGGAAGTGACTGGA
GTTACTCTCACTGGAGAGGGTCAGGCAGATCTCACCCTTGTCAGCCCAGGGCTGGACCAACTCAACAGGC
AACTACAACTGGTCACTTACAGCAGCCGAAGCTACCAGACCAACACAGCAGACACAGTCCGGTTCTCCAC
CGAGGGACATGAGGCTGCTTTCACTATCCGCATAAGACACCCGCCCAACCCTCGGCTGTACCCACCTGGG
TCTCTACCCCAGGGAGCCCAGTACAACATCAGCGCTCTAGTCACGATTGCCACCAAGACCTTCCTCCGTT
ATGATCGGCTACGGGCTCTCATCACCAGTATCCGCCGCTTCTACCCAACGGTTACCGTGGTCATCGCTGA
CGACAGCGACAAGCCAGAGCGCGTTAGTGGCCCCTACGTGGAACACTATCTCATGCCCTTCGGCAAGGGC
TGGTTCGCAGGCCGGAACCTGGCCGTGTCTCAAGTAACCACCAAGTACGTGCTGTGGGTGGACGACGACT
TCGTCTTCACGGCGCGGACGCGGCTGGAGAGGCTTGTGGACGTGCTGGAGCGGACGCCGCTGGACCTGGT
GGGGGGCGCGGTGCGCGAGATCTCCGGCTTTGCCACCACTTATCGGCAGCTGCTGAGCGTGGAGCCCGGC
GCCCCAGGCCTCGGGAACTGCCTCCGGCAAAGGCGCGGCTTCCACCACGAGCTCGTCGGCTTCCCAGGCT
GCGTGGTCACCGACGGCGTGGTTAACTTCTTCCTGGCGCGGACTGACAAGGTGCGCGAGGTCGGTTTCGA
CCCCCGCCTCAGCCGCGTGGCTCATCTGGAATTCTTCTTGGATGGGCTTGGTTCCCTTCGGGTTGGCTCC
TGCTCCGACGTCGTGGTGGATCATGCATCCAAACTGAAGCTGCCTTGGACATCAAGGGATGCCGGAGCAG
AGACTTACGCCCGGTACCGTTACCCAGGATCACTGGACGAGAGCCAGATGGCCAAACACCGGCTGCTCTT
CTTCAAACACCGGCTGCAGTGCATGACCTCCCAGTGA

Translation (478 aa):
MWLGRRALCALVLLLACASLGLLYASTRDAPGLRLPLAPWAPPQSPRRPELPDLAPEPRYAHIPVRIKEQ
VVGSQSPADQLLIAPANSPLQYPLQGVEVQPLRSILVPGLSLQAASGQEVYQVNLTASLGTWDVAGEVTG
VTLTGEGQADLTLVSPGLDQLNRQLQLVTYSSRSYQTNTADTVRFSTEGHEAAFTIRIRHPPNPRLYPPG
SLPQGAQYNISALVTIATKTFLRYDRLRALITSIRRFYPTVTVVIADDSDKPERVSGPYVEHYLMPFGKG
WFAGRNLAVSQVTTKYVLWVDDDFVFTARTRLERLVDVLERTPLDLVGGAVREISGFATTYRQLLSVEPG
APGLGNCLRQRRGFHHELVGFPGCVVTDGVVNFFLARTDKVREVGFDPRLSRVAHLEFFLDGLGSLRVGS
CSDVVVDHASKLKLPWTSRDAGAETYARYRYPGSLDESQMAKHRLLFFKHRLQCMTSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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