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Report for CCDS33040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33040.1 Public Homo sapiens 19 IRGQ 24 110 108 CCDS HistoryNCBI Gene:126298Re-query CCDS DB by CCDS ID:33040.1Re-query CCDS DB by GeneID:126298See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000422989.6 ENSP00000387535.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000422989.6Link to Ensembl Protein Viewer:ENSP00000387535.1Re-query CCDS DB by Nucleotide ID:ENST00000422989Re-query CCDS DB by Protein ID:ENSP00000387535
Original member Current member EBI ENST00000602269.2 ENSP00000472250.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000602269.2Link to Ensembl Protein Viewer:ENSP00000472250.1Re-query CCDS DB by Nucleotide ID:ENST00000602269Re-query CCDS DB by Protein ID:ENSP00000472250
Original member Current member NCBI NM_001007561.3 NP_001007562.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001007561.3Link to Protein Sequence:NP_001007562.1Re-query CCDS DB by Nucleotide ID:NM_001007561Re-query CCDS DB by Protein ID:NP_001007562Link to BLAST:NP_001007562.1
Original member Current member NCBI NM_001388309.1 NP_001375238.1 Accepted alive Link to Nucleotide Sequence:NM_001388309.1Link to Protein Sequence:NP_001375238.1Re-query CCDS DB by Nucleotide ID:NM_001388309Re-query CCDS DB by Protein ID:NP_001375238Link to BLAST:NP_001375238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007562.1 623 Q8WZA9 623 100% 0 0
NP_001375238.1 623 Q8WZA9 623 100% 0 0

Chromosomal Locations for CCDS 33040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 43592026 43593367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 43594809 43595338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1872 nt):
ATGCCTCCGCCGCAGGGTGACGTGACCGCCTTGTTCCTGGGGCCTCCGGGCTTGGGGAAGTCCGCGCTGA
TC
GCAGCGCTGTGCGACAAGGATGTGGAGACGCTCGAGGCCCCCGAGGGACGGCCGGACTCCGGGGTTCC
C
AGCCTAAGAGCTGCGGGCCCAGGCCTTTTTCTGGGCGAGCTGAGCTGCCCACCCGCAGCGCCGGGGCCC
TGG
GCGGCGGAAGCCAACGTGCTGGTACTGGTGCTGCCCGGACCCGAGGGGAACGGGGAACCGTTGGCTC
CA
GCCCTGGGAGAGGCAGCGCTGGCCGCCCTGGCCCGAGGGACCCCGCTACTGGCTGTGCGGAACCTCCG
T
CCTGGGGATTCACAGACTGCCGCCCAGGCCCGTGATCAGACAGCAGCTCTGCTGAACAGCGCGGGGTTA
GGA
GCTGCGGATCTGTTTGTGCTACCGGCGAACTGCGGCAGCAGCGACGGCTGCGAGGAGCTAGAGCGCC
TC
CGGGCGGCGCTGCAGAGCCAGGCAGAAGCGCTGCGGAGGCTCCTGCCACCGGCGCAGGATGGCTTCGA
G
GTGTTGGGTGCAGCAGAGCTAGAGGCTGTGCGTGAGGCCTTTGAGACCGGCGGCCTTGAGGCTGCGCTG
TCG
TGGGTGCGCTCAGGCCTGGAGCGCCTGGGCAGCGCACGGCTAGACCTGGCCGTGGCTGGCAAGGCTG
AC
GTGGGCCTTGTGGTGGACATGCTGCTTGGATTGGATCCTGGCGACCCAGGCGCTGCGCCTGCTTCGGT
C
CCCACAGCACCCACTCCCTTCCCAGCCCCAGAGCGCCCGAATGTGGTGCTCTGGACCGTGCCTCTGGGC
CAC
ACGGGCACTGCCACCACCGCGGCCGCCGCCTCTCACCCAACGCACTACGACGCCCTCATCCTCGTCA
CC
CCTGGGGCCCCCACTGAGAAGGACTGGGCCCAGGTCCAGGCCTTGCTGCTACCAGATGCGCCTCTTGT
C
TGCGTGCGCACAGACGGCGAGGGCGAGGATCCGGAGTGTCTGGGAGAAGGCAAGATGGAGAATCCCAAG
GGC
GAGAGCTTAAAGAACGCAGGTGGAGGGGGATTGGAGAATGCACTCAGTAAGGGAAGGGAGAAATGTA
GC
GCTGGATCGCAGAAAGCAGGCAGCGGGGAAGGTCCTGGGAAAGCTGGCAGCGAGGGTTTGCAGCAGGT
T
GTCGGCATGAAGAAATCAGGTGGTGGCGACTCAGAGCGGGCCGCTGCGTTAAGCCCGGAGGACGAGACG
TGG
GAGGTGCTGGAGGAGGCGCCGCCGCCAGTGTTCCCCCTACGGCCTGGCGGACTCCCAGGGCTATGCG
AA
TGGCTGCGGCGAGCGCTCCCCCCAGCCCAGGCAGGGGCACTGCTGCTGGCGTTGCCACCAGCATCTCC
C
AGCGCTGCCCGAACCAAGGCTGCGGCGTTGCGAGCCGGGGCGTGGAGGCCAGCTCTGCTGGCTAGTCTG
GCG
GCGGCGGCGGCACCACTCCCAGGGCTGGGCTGGGCATGCGACGTGGCACTTCTGCGGGGTCAGCTGG
CG
GAGTGGCGACGGGGCCTGGGGCTGGAACCCACGGCACTGGCTCGACGTGAGCGTGCCCTGGGCCTGGC
T
TCTGGAGAGCTGGCAGCGCGCGCTCATTTCCCAGGCCCGGTGACGCGCGCCGAGGTGGAAGCAAGACTG
GGC
GCCTGGGCGGGCGAGGGCACTGCTGGGGGCGCAGCACTGGGGGCTCTCTCCTTCCTGTGGCCTGCGG
GT
GGTGCAGCGGCGACAGGTGGCCTGGGCTACCGAGCGGCTCACGGCGTCCTGCTGCAGGCTCTCGATGA
G
ATGCGGGCTGATGCTGAGGCTGTGCTGGCACCCCCTGAGCCTGCCCAGTGA


Translation (623 aa):
MPPPQGDVTALFLGPPGLGKSALIAALCDKDVETLEAPEGRPDSGVPSLRAAGPGLFLGELSCPPAAPGP
W
AAEANVLVLVLPGPEGNGEPLAPALGEAALAALARGTPLLAVRNLRPGDSQTAAQARDQTAALLNSAGL
G
AADLFVLPANCGSSDGCEELERLRAALQSQAEALR
RLLPPAQDGFEVLGAAELEAVREAFETGGLEAAL
S
WVRSGLERLGSARLDLAVAGKADVGLVVDMLLGLDPGDPGAAPASVPTAPTPFPAPERPNVVLWTVPLG
H
TGTATTAAAASHPTHYDALILVTPGAPTEKDWAQVQALLLPDAPLVCVRTDGEGEDPECLGEGKMENPK
G
ESLKNAGGGGLENALSKGREKCSAGSQKAGSGEGPGKAGSEGLQQVVGMKKSGGGDSERAAALSPEDET
W
EVLEEAPPPVFPLRPGGLPGLCEWLRRALPPAQAGALLLALPPASPSAARTKAAALRAGAWRPALLASL
A
AAAAPLPGLGWACDVALLRGQLAEWRRGLGLEPTALARRERALGLASGELAARAHFPGPVTRAEVEARL
G
AWAGEGTAGGAALGALSFLWPAGGAAATGGLGYRAAHGVLLQALDEMRADAEAVLAPPEPAQ




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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