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Report for CCDS762.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
762.1 Public Homo sapiens 1 SLC35A3 24 110 108 CCDS HistoryNCBI Gene:23443Re-query CCDS DB by CCDS ID:762.1Re-query CCDS DB by GeneID:23443See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 762.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000427993.7 ENSP00000414947.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000427993.7Link to Ensembl Protein Viewer:ENSP00000414947.2Re-query CCDS DB by Nucleotide ID:ENST00000427993Re-query CCDS DB by Protein ID:ENSP00000414947
Original member Current member EBI ENST00000465289.6 ENSP00000418527.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465289.6Link to Ensembl Protein Viewer:ENSP00000418527.2Re-query CCDS DB by Nucleotide ID:ENST00000465289Re-query CCDS DB by Protein ID:ENSP00000418527
Original member Current member EBI ENST00000533028.8 ENSP00000433849.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000533028.8Link to Ensembl Protein Viewer:ENSP00000433849.1Re-query CCDS DB by Nucleotide ID:ENST00000533028Re-query CCDS DB by Protein ID:ENSP00000433849
Original member Current member NCBI NM_012243.3 NP_036375.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012243.3Link to Protein Sequence:NP_036375.1Re-query CCDS DB by Nucleotide ID:NM_012243Re-query CCDS DB by Protein ID:NP_036375Link to BLAST:NP_036375.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036375.1 325 Q9Y2D2-1 325 100% 0 0

Chromosomal Locations for CCDS 762.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 99993555 99993741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 99999261 99999415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100007034 100007156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100011365 100011533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100015302 100015420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100017682 100017815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 100022386 100022476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGTTCGCCAACCTAAAATACGTTTCCCTGGGAATTTTGGTCTTTCAGACTACCAGTTTGGTTCTAACAA
TGCGTTATTCCAGAACTTTAAAAGAAGAAGGACCTCGTTATCTATCTTCTACAGCAGTGGTTGTTGCTGA
ACTTTTGAAGATAATGGCCTGCATTTTATTGGTCTACAAAGACAGCAAATGTAGTCTAAGAGCACTGAAT
CGAGTACTACATGATGAAATTCTTAATAAACCTATGGAAACACTTAAACTTGCTATTCCATCAGGGATCT
ATACTCTTCAGAATAATTTACTGTATGTGGCACTATCAAATCTAGATGCAGCTACTTATCAGGTCACGTA
TCAGTTAAAAATTCTTACAACAGCATTATTTTCTGTGTCTATGCTTAGTAAAAAATTGGGTGTATACCAG
TGGCTGTCCCTAGTAATTTTGATGACAGGAGTTGCTTTTGTACAGTGGCCCTCAGATTCTCAGCTTGATT
CTAAGGAACTTTCAGCTGGTTCTCAATTTGTAGGACTCATGGCAGTTCTCACAGCATGTTTTTCAAGTGG
CTTTGCTGGGGTTTACTTTGAGAAAATCTTAAAAGAAACAAAACAATCAGTGTGGATAAGAAATATTCAG
CTTGGTTTCTTTGGAAGTATATTTGGATTAATGGGTGTATACATTTATGATGGAGAACTGGTATCAAAGA
ATGGATTTTTTCAGGGATATAACCGACTGACCTGGATAGTAGTTGTTCTTCAGGCACTTGGAGGCCTTGT
AATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCAACCTCTTTATCGATAATATTA
TCAACATTGATCTCCTATTTTTGGCTTCAAGATTTTGTGCCAACCAGTGTCTTTTTCCTTGGAGCCATCC
TTGTAATAACAGCTACTTTTTTGTATGGTTATGATCCCAAACCTGCAGGAAATCCCACTAAAGCATAG

Translation (325 aa):
MFANLKYVSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKCSLRALN
RVLHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAATYQVTYQLKILTTALFSVSMLSKKLGVYQ
WLSLVILMTGVAFVQWPSDSQLDSKELSAGSQFVGLMAVLTACFSSGFAGVYFEKILKETKQSVWIRNIQ
LGFFGSIFGLMGVYIYDGELVSKNGFFQGYNRLTWIVVVLQALGGLVIAAVIKYADNILKGFATSLSIIL
STLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPAGNPTKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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