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Report for CCDS77256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
77256.1 Public Homo sapiens 19 USHBP1 24 110 108 CCDS HistoryNCBI Gene:83878Re-query CCDS DB by CCDS ID:77256.1Re-query CCDS DB by GeneID:83878See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 77256.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000431146.6 ENSP00000407902.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000431146.6Link to Ensembl Protein Viewer:ENSP00000407902.2Re-query CCDS DB by Nucleotide ID:ENST00000431146Re-query CCDS DB by Protein ID:ENSP00000407902
Original member Current member NCBI NM_001297703.2 NP_001284632.1 Accepted alive Link to Nucleotide Sequence:NM_001297703.2Link to Protein Sequence:NP_001284632.1Re-query CCDS DB by Nucleotide ID:NM_001297703Re-query CCDS DB by Protein ID:NP_001284632Link to BLAST:NP_001284632.1

Chromosomal Locations for CCDS 77256.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 17250225 17250414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17251582 17251704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17251911 17252017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17255385 17255606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17256471 17256720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17258212 17258385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17259289 17259429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17259596 17259732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17259897 17260022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17262552 17262990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 17264246 17264256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGCTCCACCCGACTGACAAGAAGATGGATGGGGGCTCTGGCAGGGAACTGGCCTCAGCCCCCGAAGTGC
CCCACAAACCTGCAGTGGAAGCCCACCAAGCCCCAGAAGCAGCCCTACAGTACAAGGAGACTGTGCCCCC
TGGGAATGGGGCCCCCGATGTGTTTCAGACCCTCCAGCACACTCTGAGCTCCCTGGAGGCAGCGGCTGCA
GCCTGGCGCCACCAGCCCCCCAGCCATTCTGGGCCGATGGAGTTCGAAGGCACAAGCGAAGGGGGAGCAG
GTTCCCTTGGGAAGCAGGAAGGGGCAGGGAGCTGCCAGCGAGAGGCAGCTCGCCTGGCCGAGAGGAATGC
CTGGCTCCGGCTGGCCCTGAGTAGCCGAGAGGATGAGCTGGTCCGCACGCAGGCCTCCCTGGAGGCCATC
CGAGCTGAGAAGGAGACGCTGCAGAAAGAGGTTCAAGAGCTGCAGGATTCCCTCTTGAGGCTGGAGCCCT
GCCCACATCTTTCCCACAACCAAGCAGGTGGCTCAGGCAGTGGTTCTAGCAGCTCTGAGGCAGACAGGGA
ACCCTGGGAGACTCAGGACTCCTTCTCCCTGGCTCACCCCCTGCTTCGGCGCCTCCGCAGCCATTCCAGC
ACCCAGATCCTTGGGTCTCTTCCCAACCAGCCCCTCAGTCCTGAGATGCACATCATGGAAGCCCAGATGG
AGCAACTCCGGGGGAGCATTGAGAAGCTCAAATGCTTTAATCGTCTGCTATCAGCTGTGCTACAGGGATA
CAAGGGCCGCTGTGAAGGCCTCAGCATGCAGCTAGGCCAGCGGGAGGCTGAGGCCACAGCATTGCATCTG
GCCTTGCAGTACAGTGAACACTGTGAAGAGGCATACAGGGTTCTGCTTGCTCTGCGGGAGGCCGACTCAG
GAGCAGGAGACGAAGCCCCCATGAGTGACCTGCAAGCAGCTGAAAAGGAAGCATGGAGGCTGCTGGCACA
AGAGGAGGCTGCCATGGATGCAGGAGCACAGCAGAATCCACAGCCAAGCCCTGAAGGCAGCAGTGTGGAT
AAGCCCACCCCACAGGAAGTGGCTTTCCAGCTCCGAAGCTATGTCCAGCGTCTCCAGGAGCGCCGTTCTC
TAATGAAGATTCTCTCAGAGCCTGGCCCCACCTTGGCACCCATGCCCACTGTGCCCCGTGCAGAAGCCAT
GGTGCAGGCCATTCTGGGGACCCAGGCTGGCCCAGCTCTTCCCCGACTGGAGAAGACACAAATTCAGCAG
GACCTGGTGGCCGCAAGGGAGGCCCTGGCGGACCTGATGCTTCGGCTGCAGCTGGTGCGGCGTGAGAAGC
GGGGCCTAGAGCTGCGGGAGGCTGCCCTCCGAGCCCTGGGTCCAGCTCACGTGCTCCTGCTGGAGCAGCT
GCGGTGGGAACGGGCAGAGCTCCAGGCTGGTGGGGCAAACAGCAGTGGCGGACATAGCAGCGGAGGTGGC
AGCAGCGGGGACGAGGAAGAGTGGTATCAGGGCCTTCCTGCTGTCCCTGGTGGCACCAGTGGCATTGATG
GTGGCCAGGTGGGCAGAGCCTGGGACCCAGAGAAGTTAGCCCAGGAACTGGCAGCATCGCTCACCAGGAC
ACTGGACCTGCAGGAGCAGCTGCAGTCTCTGCGCAGGGAGCTGGAACAGGTGGCTCAGAAGGGGCGAGCC
AGACGGTCTCAGAGTGCCGAGCTGAACAGGGATTTATGCAAAGCCCACAGCGCCCTGGTCCTGGCCTTCC
GAGGAGCCCACCGGAAGCAGGAAGAGCAACGCCGGAAGTTGGAGCAGCAGATGGCACTCATGGAGGCTCA
GCAGGCCGAGGAGGTGGCGGTGCTCGAAGCCACTGCAAGGGCCCTGGGGAAGCCCAGGCCTCCCCTCCCG
CCTCCCCAGCTTGGGGACACCTTTCTGTAG

Translation (639 aa):
MLHPTDKKMDGGSGRELASAPEVPHKPAVEAHQAPEAALQYKETVPPGNGAPDVFQTLQHTLSSLEAAAA
AWRHQPPSHSGPMEFEGTSEGGAGSLGKQEGAGSCQREAARLAERNAWLRLALSSREDELVRTQASLEAI
RAEKETLQKEVQELQDSLLRLEPCPHLSHNQAGGSGSGSSSSEADREPWETQDSFSLAHPLLRRLRSHSS
TQILGSLPNQPLSPEMHIMEAQMEQLRGSIEKLKCFNRLLSAVLQGYKGRCEGLSMQLGQREAEATALHL
ALQYSEHCEEAYRVLLALREADSGAGDEAPMSDLQAAEKEAWRLLAQEEAAMDAGAQQNPQPSPEGSSVD
KPTPQEVAFQLRSYVQRLQERRSLMKILSEPGPTLAPMPTVPRAEAMVQAILGTQAGPALPRLEKTQIQQ
DLVAAREALADLMLRLQLVRREKRGLELREAALRALGPAHVLLLEQLRWERAELQAGGANSSGGHSSGGG
SSGDEEEWYQGLPAVPGGTSGIDGGQVGRAWDPEKLAQELAASLTRTLDLQEQLQSLRRELEQVAQKGRA
RRSQSAELNRDLCKAHSALVLAFRGAHRKQEEQRRKLEQQMALMEAQQAEEVAVLEATARALGKPRPPLP
PPQLGDTFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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