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Report for CCDS8559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8559.1 Public Homo sapiens 12 MLF2 24 110 108 CCDS HistoryNCBI Gene:8079Re-query CCDS DB by CCDS ID:8559.1Re-query CCDS DB by GeneID:8079See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000203630.10 ENSP00000203630.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000203630.10Link to Ensembl Protein Viewer:ENSP00000203630.5Re-query CCDS DB by Nucleotide ID:ENST00000203630Re-query CCDS DB by Protein ID:ENSP00000203630
Original member Current member EBI ENST00000435120.5 ENSP00000403941.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000435120.5Link to Ensembl Protein Viewer:ENSP00000403941.1Re-query CCDS DB by Nucleotide ID:ENST00000435120Re-query CCDS DB by Protein ID:ENSP00000403941
Original member Current member EBI ENST00000539187.5 ENSP00000446317.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539187.5Link to Ensembl Protein Viewer:ENSP00000446317.1Re-query CCDS DB by Nucleotide ID:ENST00000539187Re-query CCDS DB by Protein ID:ENSP00000446317
Original member Current member NCBI NM_001382225.1 NP_001369154.1 Accepted alive Link to Nucleotide Sequence:NM_001382225.1Link to Protein Sequence:NP_001369154.1Re-query CCDS DB by Nucleotide ID:NM_001382225Re-query CCDS DB by Protein ID:NP_001369154Link to BLAST:NP_001369154.1
Original member Current member NCBI NM_001382226.1 NP_001369155.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001382226.1Link to Protein Sequence:NP_001369155.1Re-query CCDS DB by Nucleotide ID:NM_001382226Re-query CCDS DB by Protein ID:NP_001369155Link to BLAST:NP_001369155.1
Original member Current member NCBI NM_005439.3 NP_005430.1 Accepted alive Link to Nucleotide Sequence:NM_005439.3Link to Protein Sequence:NP_005430.1Re-query CCDS DB by Nucleotide ID:NM_005439Re-query CCDS DB by Protein ID:NP_005430Link to BLAST:NP_005430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001369154.1 248 Q15773 248 100% 0 0
NP_001369155.1 248 Q15773 248 100% 0 0
NP_005430.1 248 Q15773 248 100% 0 0

Chromosomal Locations for CCDS 8559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 6748795 6748982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6749848 6750007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6750177 6750305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6750713 6750766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6751641 6751676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6751925 6752054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 6752285 6752334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTTCCGCTTCATGAGGGACGTGGAGCCTGAGGATCCCATGTTCCTGATGGATCCCTTTGCTATTCACC
GTCAGCATATGAGCCGTATGTTGTCAGGTGGCTTTGGATATAGCCCCTTCCTCAGCATCACAGATGGCAA
CATGCCAGGGACCAGGCCTGCCAGCCGCCGGATGCAGCAGGCTGGAGCTGTCTCCCCCTTTGGGATGCTG
GGAATGTCGGGTGGTTTCATGGACATGTTTGGGATGATGAATGACATGATTGGAAACATGGAACACATGA
CAGCTGGAGGCAATTGCCAGACCTTCTCATCTTCCACTGTCATCTCCTACTCCAATACGGGTGATGGTGC
CCCCAAGGTCTACCAAGAGACATCAGAGATGCGCTCGGCACCAGGCGGGATCCGGGAGACACGGAGGACT
GTTCGGGATTCAGACAGTGGACTGGAGCAGATGTCCATTGGGCATCACATCCGGGACAGGGCTCACATCC
TCCAGCGCTCCCGAAACCATCGCACGGGGGACCAGGAGGAGCGGCAGGACTATATCAACCTGGATGAGAG
TGAGGCCGCAGCGTTTGATGACGAGTGGCGGCGGGAGACCTCCCGATTCCGGCAGCAGCGTCCCCTGGAG
TTTCGGCGGCTTGAGTCCTCAGGGGCTGGGGGACGAAGGGCGGAGGGGCCTCCCCGCCTGGCCATCCAGG
GACCTGAGGACTCCCCTTCCCGACAGTCCCGCCGCTATGACTGGTGA

Translation (248 aa):
MFRFMRDVEPEDPMFLMDPFAIHRQHMSRMLSGGFGYSPFLSITDGNMPGTRPASRRMQQAGAVSPFGML
GMSGGFMDMFGMMNDMIGNMEHMTAGGNCQTFSSSTVISYSNTGDGAPKVYQETSEMRSAPGGIRETRRT
VRDSDSGLEQMSIGHHIRDRAHILQRSRNHRTGDQEERQDYINLDESEAAAFDDEWRRETSRFRQQRPLE
FRRLESSGAGGRRAEGPPRLAIQGPEDSPSRQSRRYDW


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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