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Report for CCDS47136.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47136.1 Public Homo sapiens 4 TBC1D9 24 110 108 CCDS HistoryNCBI Gene:23158Re-query CCDS DB by CCDS ID:47136.1Re-query CCDS DB by GeneID:23158See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47136.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000442267.3 ENSP00000411197.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000442267.3Link to Ensembl Protein Viewer:ENSP00000411197.2Re-query CCDS DB by Nucleotide ID:ENST00000442267Re-query CCDS DB by Protein ID:ENSP00000411197
Original member Current member NCBI NM_015130.3 NP_055945.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015130.3Link to Protein Sequence:NP_055945.2Re-query CCDS DB by Nucleotide ID:NM_015130Re-query CCDS DB by Protein ID:NP_055945Link to BLAST:NP_055945.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055945.2 1266 Q6ZT07 1266 100% 0 0

Chromosomal Locations for CCDS 47136.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140622195 140622917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140624116 140624219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140624314 140624388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140627441 140627527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140628300 140628365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140633948 140634188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140639086 140639154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140639330 140639428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140657097 140657226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140657527 140657812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140659588 140659705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140661893 140662107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140668917 140669067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140669634 140669804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140670720 140670926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140676894 140677101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140678942 140679203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140679615 140679843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140686344 140686462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140701504 140701614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140755916 140756045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3801 nt):
ATGTGGGTGAACCCGGAGGAGGTGTTGCTGGCCAACGCGCTGTGGATCACCGAGAGGGCCAACCCATACT
TCATCCTGCAGCGGAGGAAGGGCCACGCCGGCGATGGAGGCGGCGGCGGCGGACTGGCGGGCCTGCTGGT
GGGTACCCTTGATGTTGTGTTGGACTCCAGCGCCCGGGTCGCTCCTTACCGAATCTTGTACCAGACTCCA
GACTCCCTGGTCTACTGGACCATCGCCTGTGGTGGTTCCAGGAAAGAAATCACTGAACACTGGGAATGGC
TTGAGCAAAATCTCTTGCAGACACTCTCCATCTTTGAAAATGAGAATGATATCACCACATTTGTGAGAGG
AAAAATACAGGGCATCATTGCAGAATACAACAAAATCAATGATGTAAAGGAAGATGATGACACGGAGAAG
TTTAAAGAAGCCATTGTGAAATTTCATAGGCTGTTTGGGATGCCAGAGGAAGAGAAACTCGTCAACTATT
ACTCTTGCAGCTATTGGAAGGGGAAGGTCCCCCGTCAGGGTTGGATGTACCTCAGCATTAACCACCTTTG
CTTTTATTCTTTTCTTATGGGAAGGGAAGCGAAACTGGTCATCCGGTGGGTAGACATCACTCAGCTTGAG
AAGAATGCCACCCTGCTTCTGCCTGATGTGATCAAAGTGAGCACACGGTCCAGTGAGCATTTCTTCTCTG
TATTCCTCAACATCAACGAGACCTTCAAGTTAATGGAGCAGCTTGCCAACATAGCCATGAGGCAACTCTT
AGACAATGAGGGATTTGAACAAGATCGATCCCTGCCCAAACTCAAAAGGAAATCTCCTAAAAAAGTGTCT
GCTCTAAAACGTGATCTTGATGCCAGGGCAAAGAGTGAGAGATACCGTGCACTTTTCCGGCTGCCCAAAG
ATGAAAAATTAGATGGCCACACAGACTGCACTCTCTGGACTCCATTTAACAAAATGCACATTTTGGGGCA
GATGTTTGTGTCCACAAATTACATCTGTTTTACCAGCAAGGAGGAGAACTTATGTAGCCTCATTATCCCG
CTCCGTGAGGTGACAATTGTGGAAAAGGCAGACAGCTCCAGTGTGCTCCCCAGTCCCTTATCCATCAGCA
CCCGAAACAGGATGACCTTCCTATTTGCCAACTTGAAAGATAGAGACTTTCTAGTGCAGAGGATCTCAGA
TTTCCTGCAACAGACTACTTCCAAAATATATTCTGACAAGGAGTTTGCAGGAAGTTACAACAGTTCAGAT
GATGAGGTGTACTCTCGACCCAGCAGCCTCGTCTCCTCCAGCCCCCAGAGAAGCACGAGCTCTGATGCTG
ATGGAGAGCGCCAGTTTAACCTAAATGGCAACAGCGTCCCCACAGCCACACAGACCCTGATGACCATGTA
TCGGCGGCGGTCTCCCGAGGAGTTCAACCCGAAATTGGCCAAAGAGTTTCTGAAAGAGCAAGCCTGGAAG
ATTCACTTTGCTGAGTATGGGCAAGGGATCTGCATGTACCGCACAGAGAAAACGCGGGAGCTGGTGTTGA
AGGGCATCCCGGAGAGCATGCGTGGGGAGCTCTGGCTGCTGCTGTCAGGTGCCATCAATGAGAAGGCCAC
ACATCCTGGGTACTATGAAGACCTAGTGGAGAAGTCCATGGGGAAGTATAATCTCGCCACGGAGGAGATT
GAGAGGGATTTACACCGCTCCCTTCCAGAACACCCAGCTTTTCAGAATGAAATGGGCATTGCTGCACTAA
GGAGAGTCTTAACAGCTTATGCTTTTCGAAATCCCAACATAGGGTATTGCCAGGCCATGAATATTGTCAC
TTCAGTGCTGCTGCTTTATGCCAAAGAGGAGGAAGCTTTCTGGCTGCTTGTGGCTTTGTGTGAGCGCATG
CTCCCAGATTACTACAACACCAGAGTTGTGGGTGCACTGGTGGACCAAGGTGTCTTTGAGGAGCTAGCAC
GAGACTACGTCCCACAGCTGTACGACTGCATGCAAGACCTGGGCGTGATTTCCACCATCTCCCTGTCTTG
GTTCCTCACACTATTTCTCAGTGTGATGCCTTTTGAGAGTGCAGTTGTGGTTGTTGACTGTTTCTTCTAT
GAAGGAATTAAAGTGATATTCCAGTTGGCCCTAGCTGTGCTGGATGCAAATGTGGACAAACTGTTGAACT
GCAAGGATGATGGGGAGGCCATGACCGTTTTGGGAAGGTATTTAGACAGTGTGACCAATAAAGACAGCAC
ACTGCCTCCCATTCCTCACCTCCACTCCTTGCTCAGCGATGATGTGGAACCTTACCCTGAGGTAGACATC
TTTAGACTCATCAGAACTTCCTACGAGAAATTCGGAACTATCCGGGCAGATTTGATTGAACAGATGAGAT
TCAAACAGAGACTGAAAGTGATCCAGACGCTGGAGGATACTACGAAACGCAACGTGGTACGAACCATTGT
GACAGAAACTTCCTTTACCATTGATGAGCTGGAAGAACTTTATGCTCTTTTCAAGGCAGAACATCTCACC
AGCTGCTACTGGGGCGGGAGCAGCAACGCGCTGGACCGGCATGACCCCAGCCTGCCCTACCTGGAACAGT
ATCGCATTGACTTCGAGCAGTTCAAGGGAATGTTTGCTCTTCTCTTTCCTTGGGCATGTGGAACTCACTC
TGACGTTCTGGCCTCCCGCTTGTTCCAGTTATTAGATGAAAATGGAGACTCTTTGATTAACTTCCGGGAG
TTTGTCTCTGGGCTAAGTGCTGCATGCCATGGGGACCTCACAGAGAAGCTCAAACTCCTGTACAAAATGC
ACGTCTTGCCTGAGCCATCCTCTGATCAAGATGAACCAGATTCTGCTTTTGAAGCAACTCAGTACTTCTT
TGAAGATATTACCCCAGAATGTACACATGTTGTTGGATTGGATAGCAGAAGCAAACAGGGTGCAGATGAT
GGCTTTGTTACGGTGAGCCTAAAGCCAGACAAAGGGAAGAGAGCAAATTCCCAAGAAAATCGTAATTATT
TGAGACTGTGGACTCCAGAAAATAAATCTAAGTCAAAGAATGCAAAGGATTTACCCAAATTAAATCAGGG
GCAGTTCATTGAACTGTGTAAGACAATGTATAACATGTTCAGCGAAGACCCCAATGAGCAGGAGCTGTAC
CACGCCACGGCAGCAGTGACCAGCCTCCTGCTGGAGATTGGGGAGGTCGGCAAGTTGTTCGTGGCCCAGC
CTGCAAAGGAGGGCGGGAGCGGAGGCAGTGGGCCGTCCTGCCACCAGGGCATCCCAGGCGTGCTCTTCCC
CAAGAAAGGGCCAGGCCAGCCTTACGTGGTGGAGTCTGTTGAGCCCCTGCCGGCCAGCCTGGCCCCCGAC
AGCGAGGAACACTCCCTTGGAGGACAAATGGAGGACATCAAGCTGGAGGACTCCTCGCCCCGGGACAACG
GGGCCTGCTCCTCCATGCTGATCTCTGACGACGACACCAAGGACGACAGCTCCATGTCCTCATACTCGGT
GCTGAGTGCCGGCTCCCACGAGGAGGACAAGCTGCACTGCGAGGACATCGGAGAGGACACGGTCCTGGTG
CGGAGCGGCCAGGGCACGGCGGCACTGCCCCGGAGCACCAGCCTGGACCGGGACTGGGCCATCACCTTCG
AGCAGTTCCTGGCCTCCCTCTTAACTGAGCCTGCCCTGGTCAAGTACTTTGACAAGCCCGTGTGCATGAT
GGCCAGGATTACCAGTGCAAAAAACATCCGGATGATGGGCAAGCCCCTCACCTCGGCCAGTGACTATGAA
ATCTCGGCCATGTCCGGCTGA

Translation (1266 aa):
MWVNPEEVLLANALWITERANPYFILQRRKGHAGDGGGGGGLAGLLVGTLDVVLDSSARVAPYRILYQTP
DSLVYWTIACGGSRKEITEHWEWLEQNLLQTLSIFENENDITTFVRGKIQGIIAEYNKINDVKEDDDTEK
FKEAIVKFHRLFGMPEEEKLVNYYSCSYWKGKVPRQGWMYLSINHLCFYSFLMGREAKLVIRWVDITQLE
KNATLLLPDVIKVSTRSSEHFFSVFLNINETFKLMEQLANIAMRQLLDNEGFEQDRSLPKLKRKSPKKVS
ALKRDLDARAKSERYRALFRLPKDEKLDGHTDCTLWTPFNKMHILGQMFVSTNYICFTSKEENLCSLIIP
LREVTIVEKADSSSVLPSPLSISTRNRMTFLFANLKDRDFLVQRISDFLQQTTSKIYSDKEFAGSYNSSD
DEVYSRPSSLVSSSPQRSTSSDADGERQFNLNGNSVPTATQTLMTMYRRRSPEEFNPKLAKEFLKEQAWK
IHFAEYGQGICMYRTEKTRELVLKGIPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATEEI
ERDLHRSLPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAKEEEAFWLLVALCERM
LPDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGVISTISLSWFLTLFLSVMPFESAVVVVDCFFY
EGIKVIFQLALAVLDANVDKLLNCKDDGEAMTVLGRYLDSVTNKDSTLPPIPHLHSLLSDDVEPYPEVDI
FRLIRTSYEKFGTIRADLIEQMRFKQRLKVIQTLEDTTKRNVVRTIVTETSFTIDELEELYALFKAEHLT
SCYWGGSSNALDRHDPSLPYLEQYRIDFEQFKGMFALLFPWACGTHSDVLASRLFQLLDENGDSLINFRE
FVSGLSAACHGDLTEKLKLLYKMHVLPEPSSDQDEPDSAFEATQYFFEDITPECTHVVGLDSRSKQGADD
GFVTVSLKPDKGKRANSQENRNYLRLWTPENKSKSKNAKDLPKLNQGQFIELCKTMYNMFSEDPNEQELY
HATAAVTSLLLEIGEVGKLFVAQPAKEGGSGGSGPSCHQGIPGVLFPKKGPGQPYVVESVEPLPASLAPD
SEEHSLGGQMEDIKLEDSSPRDNGACSSMLISDDDTKDDSSMSSYSVLSAGSHEEDKLHCEDIGEDTVLV
RSGQGTAALPRSTSLDRDWAITFEQFLASLLTEPALVKYFDKPVCMMARITSAKNIRMMGKPLTSASDYE
ISAMSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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