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Report for CCDS44770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44770.1 Public Homo sapiens 11 NFRKB 24 110 108 CCDS HistoryNCBI Gene:4798Re-query CCDS DB by CCDS ID:44770.1Re-query CCDS DB by GeneID:4798See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44770.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446488.7 ENSP00000400476.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446488.7Link to Ensembl Protein Viewer:ENSP00000400476.2Re-query CCDS DB by Nucleotide ID:ENST00000446488Re-query CCDS DB by Protein ID:ENSP00000400476
Original member Current member EBI ENST00000524746.5 ENSP00000433572.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000524746.5Link to Ensembl Protein Viewer:ENSP00000433572.1Re-query CCDS DB by Nucleotide ID:ENST00000524746Re-query CCDS DB by Protein ID:ENSP00000433572
Original member Current member EBI ENST00000682444.1 ENSP00000506850.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682444.1Link to Ensembl Protein Viewer:ENSP00000506850.1Re-query CCDS DB by Nucleotide ID:ENST00000682444Re-query CCDS DB by Protein ID:ENSP00000506850
Original member Current member NCBI NM_001143835.2 NP_001137307.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001143835.2Link to Protein Sequence:NP_001137307.1Re-query CCDS DB by Nucleotide ID:NM_001143835Re-query CCDS DB by Protein ID:NP_001137307Link to BLAST:NP_001137307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137307.1 1299 Q6P4R8-1 1299 100% 0 0

Chromosomal Locations for CCDS 44770.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 129864725 129864850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129864966 129865101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129865877 129865983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129869494 129870261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129872884 129873096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129873745 129874015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874113 129874333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874501 129874580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129874793 129874916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129875357 129875463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129876721 129876895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129877325 129877385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129878309 129878355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129878464 129878543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129881443 129881508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129881727 129881853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129882086 129882194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129882451 129882631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129883122 129883206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129884070 129884143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129884745 129884846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129885435 129885609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129886317 129886444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129888594 129888795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 129892715 129892849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3900 nt):
ATGGATTCCTTAGACCATATGCTGACAGATCCTCTGGAACTTGGTCCGTGTGGAGATGGCCATGGCACGC
GCATCATGGAGGATTGCCTCCTGGGAGGCACCAGAGTTAGTCTGCCCGAGGACCTTCTGGAGGATCCTGA
GATCTTCTTTGATGTTGTCAGCCTCTCAACATGGCAGGAAGTGTTAAGTGATTCTCAACGTGAACACCTC
CAGCAGTTTCTGCCCCAGTTTCCTGAAGACAGTGCTGAGCAGCAGAATGAACTCATCTTAGCCTTGTTCA
GTGGGGAGAACTTCCGCTTTGGAAACCCTCTGCACATTGCCCAGAAGCTTTTCCGAGACGGACACTTTAA
CCCCGAGGTGGTCAAGTACCGGCAGTTATGCTTCAAGTCACAGTACAAGCGCTACCTCAACTCCCAGCAG
CAGTATTTCCATCGGCTGCTGAAGCAAATTCTTGCTTCCCGGAGTGATCTGCTGGAGATGGCCCGGCGGA
GTGGCCCCGCCCTTCCCTTCCGGCAGAAACGCCCTTCACCATCCCGCACACCTGAGGAGCGGGAGTGGCG
GACCCAGCAGCGCTACTTGAAGGTCTTAAGGGAAGTGAAAGAGGAGTGTGGTGACACAGCCCTGTCATCT
GATGAAGAGGATCTCAGCTCATGGCTTCCGAGCTCTCCAGCACGTTCTCCTAGTCCTGCGGTGCCCCTGC
GGGTGGTGCCCACACTTTCAACCACGGATATGAAAACTGCAGATAAAGTAGAACTGGGGGACAGTGACCT
GAAGATAATGTTAAAGAAGCACCACGAGAAGCGGAAACATCAGCCAGATCACCCGGACCTTTTGACAGGG
GACCTGACTCTCAATGACATCATGACTCGAGTAAATGCTGGCAGGAAGGGCTCTCTGGCAGCCTTATATG
ACTTGGCTGTCCTTAAAAAAAAGGTTAAGGAAAAAGAGGAAAAGAAGAAGAAGAAAATAAAAACGATCAA
ATCAGAGGCAGAGGACCTGGCCGAGCCGCTAAGCAGTACTGAAGGGGTCGCACCTCTCTCACAGGCCCCC
TCTCCGCTGGCAATTCCTGCTATCAAGGAAGAGCCCCTTGAAGACCTCAAGCCTTGCCTTGGAATCAATG
AAATATCTTCCAGCTTCTTCTCTCTTCTATTAGAGATCTTGCTGCTGGAGAGTCAGGCTAGCCTTCCTAT
GCTAGAGGAGCGAGTTTTGGATTGGCAGTCATCGCCAGCCAGCTCCCTCAACAGCTGGTTCTCTGCGGCC
CCCAACTGGGCTGAGTTGGTACTACCAGCCCTGCAGTATCTTGCTGGAGAAAGTCGAGCTGTTCCTTCCA
GTTTCTCTCCATTTGTTGAATTCAAAGAGAAAACCCAGCAGTGGAAGTTGCTTGGCCAATCCCAAGATAA
TGAAAAGGAATTAGCTGCCCTCTTCCAGCTATGGCTAGAGACCAAAGATCAGGCCTTCTGTAAGCAAGAA
AATGAAGACAGCTCAGATGCCACAACACCTGTCCCTCGGGTAAGAACTGACTATGTGGTGCGTCCCAGCA
CGGGGGAGGAGAAACGGGTTTTTCAGGAGCAGGAGCGTTACAGGTATAGCCAACCCCATAAGGCGTTCAC
CTTTCGCATGCACGGCTTTGAGTCTGTGGTGGGGCCAGTGAAGGGCGTGTTTGACAAGGAGACCTCGCTC
AACAAGGCTCGGGAGCACTCCCTGCTGCGCTCCGACCGGCCTGCCTACGTCACCATTCTGTCTCTTGTTC
GGGACGCTGCGGCTCGACTGCCTAATGGAGAAGGCACACGGGCAGAGATCTGTGAACTGCTTAAGGACTC
CCAGTTTCTTGCACCAGATGTCACCAGCACTCAGGTAAATACAGTAGTGAGTGGTGCACTGGATCGGCTA
CATTACGAAAAAGATCCCTGTGTGAAATACGACATTGGACGAAAGCTGTGGATCTACCTGCATCGTGACC
GGAGTGAAGAAGAGTTTGAGCGGATTCACCAAGCACAAGCAGCTGCAGCTAAAGCCAGAAAAGCTCTTCA
GCAAAAACCCAAGCCCCCATCCAAGGTGAAGTCCAGTAGCAAGGAGAGCTCCATAAAGGTCCTTAGCAGT
GGCCCTTCTGAGCAGAGCCAGATGAGCCTCAGTGACTCCAGTATGCCACCCACCCCAGTCACACCTGTAA
CCCCCACCACACCAGCATTGCCCGCCATTCCCATCTCCCCTCCACCTGTATCGGCAGTGAACAAAAGCGG
CCCTTCCACAGTCTCAGAACCAGCTAAGTCTAGCTCGGGTGTTCTTCTGGTGTCTTCACCAACAATGCCA
CATCTGGGAACAATGCTTTCCCCAGCTTCCAGCCAGACTGCACCCAGTTCTCAGGCTGCCGCCCGGGTCG
TGAGCCACTCTGGCTCTGCTGGACTGTCTCAGGTGCGAGTGGTGGCCCAGCCTAGCCTTCCTGCTGTTCC
CCAGCAGTCGGGAGGGCCGGCACAGACATTGCCACAGATGCCAGCAGGACCGCAGATCCGGGTTCCAGCC
ACTGCCACACAGACCAAAGTAGTGCCCCAGACAGTAATGGCCACTGTGCCCGTCAAAGCGCAGACTACGG
CAGCCACTGTGCAGCGGCCTGGACCCGGGCAGACAGGGCTCACGGTGACAAGTCTCCCTGCCACAGCCAG
CCCTGTGAGTAAGCCAGCCACGAGTTCTCCTGGGACCTCTGCTCCCAGTGCCTCCACGGCTGCCGTCATT
CAAAATGTCACAGGACAGAACATCATCAAGCAGGTGGCAATCACTGGGCAGCTTGGTGTGAAGCCCCAAA
CAGGCAACAGCATTCCACTCACAGCCACTAACTTCCGCATCCAGGGTAAGGATGTATTGCGTCTGCCGCC
CTCTTCCATCACCACAGATGCCAAGGGCCAGACGGTTCTGCGAATCACTCCGGACATGATGGCCACATTG
GCCAAGTCCCAGGTTACCACAGTCAAATTGACCCAGGACCTCTTCGGGACAGGAGGCAACACTACAGGCA
AAGGCATCTCTGCCACCTTACACGTCACTTCCAATCCAGTACATGCAGCTGATAGCCCTGCCAAGGCCAG
TTCAGCCAGTGCCCCTTCATCCACTCCAACAGGTACCACTGTGGTCAAAGTGACTCCTGACCTCAAGCCA
ACAGAAGCCTCAAGTTCGGCTTTTCGCTTGATGCCAGCTCTTGGCGTGAGTGTGGCTGACCAGAAGGGAA
AAAGCACAGTGGCCTCTTCAGAAGCAAAACCAGCTGCCACGATCCGCATCGTGCAGGGACTGGGAGTGAT
GCCTCCCAAAGCAGGCCAGACCATCACCGTTGCAACCCACGCCAAGCAAGGGGCCTCGGTGGCCAGTGGG
TCTGGAACTGTCCATACTTCAGCGGTGTCCTTACCCAGTATGAATGCTGCTGTGTCCAAGACTGTAGCTG
TGGCTTCTGGGGCTGCAAGCACCCCCATCAGCATCAGCACAGGAGCCCCCACCGTGCGGCAGGTCCCTGT
CAGCACCACGGTTGTGTCCACGTCCCAGGCTGGGAAGTTGCCTACACGGATCACAGTTCCCCTCTCTGTG
ATCAGCCAGCCAATGAAGGGCAAGAGCGTGGTCACAGCCCCCATCATCAAAGGCAACCTTGGAGCCAACC
TCAGTGGGTTGGGCCGCAACATCATCCTCACAACTATGCCAGCAGGCACTAAGCTCATTGCTGGCAATAA
GCCTGTTAGTTTCCTCACTGCTCAGCAGTTGCAGCAGCTTCAGCAGCAAGGTCAGGCCACACAGGTGCGC
ATCCAGACTGTCCCTGCATCCCATCTCCAACAGGGAACAGCTTCTGGCTCCTCCAAAGCAGTCTCCACTG
TTGTTGTGACTACAGCTCCGTCTCCTAAACAGGCACCTGAGCAACAATGA

Translation (1299 aa):
MDSLDHMLTDPLELGPCGDGHGTRIMEDCLLGGTRVSLPEDLLEDPEIFFDVVSLSTWQEVLSDSQREHL
QQFLPQFPEDSAEQQNELILALFSGENFRFGNPLHIAQKLFRDGHFNPEVVKYRQLCFKSQYKRYLNSQQ
QYFHRLLKQILASRSDLLEMARRSGPALPFRQKRPSPSRTPEEREWRTQQRYLKVLREVKEECGDTALSS
DEEDLSSWLPSSPARSPSPAVPLRVVPTLSTTDMKTADKVELGDSDLKIMLKKHHEKRKHQPDHPDLLTG
DLTLNDIMTRVNAGRKGSLAALYDLAVLKKKVKEKEEKKKKKIKTIKSEAEDLAEPLSSTEGVAPLSQAP
SPLAIPAIKEEPLEDLKPCLGINEISSSFFSLLLEILLLESQASLPMLEERVLDWQSSPASSLNSWFSAA
PNWAELVLPALQYLAGESRAVPSSFSPFVEFKEKTQQWKLLGQSQDNEKELAALFQLWLETKDQAFCKQE
NEDSSDATTPVPRVRTDYVVRPSTGEEKRVFQEQERYRYSQPHKAFTFRMHGFESVVGPVKGVFDKETSL
NKAREHSLLRSDRPAYVTILSLVRDAAARLPNGEGTRAEICELLKDSQFLAPDVTSTQVNTVVSGALDRL
HYEKDPCVKYDIGRKLWIYLHRDRSEEEFERIHQAQAAAAKARKALQQKPKPPSKVKSSSKESSIKVLSS
GPSEQSQMSLSDSSMPPTPVTPVTPTTPALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMP
HLGTMLSPASSQTAPSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQSGGPAQTLPQMPAGPQIRVPA
TATQTKVVPQTVMATVPVKAQTTAATVQRPGPGQTGLTVTSLPATASPVSKPATSSPGTSAPSASTAAVI
QNVTGQNIIKQVAITGQLGVKPQTGNSIPLTATNFRIQGKDVLRLPPSSITTDAKGQTVLRITPDMMATL
AKSQVTTVKLTQDLFGTGGNTTGKGISATLHVTSNPVHAADSPAKASSASAPSSTPTGTTVVKVTPDLKP
TEASSSAFRLMPALGVSVADQKGKSTVASSEAKPAATIRIVQGLGVMPPKAGQTITVATHAKQGASVASG
SGTVHTSAVSLPSMNAAVSKTVAVASGAASTPISISTGAPTVRQVPVSTTVVSTSQAGKLPTRITVPLSV
ISQPMKGKSVVTAPIIKGNLGANLSGLGRNIILTTMPAGTKLIAGNKPVSFLTAQQLQQLQQQGQATQVR
IQTVPASHLQQGTASGSSKAVSTVVVTTAPSPKQAPEQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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