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Report for CCDS42265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42265.1 Public Homo sapiens 17 TBC1D26 24 110 108 CCDS HistoryNCBI Gene:353149Re-query CCDS DB by CCDS ID:42265.1Re-query CCDS DB by GeneID:353149See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 42265.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000469477.3 ENSP00000434391.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000469477.3Link to Ensembl Protein Viewer:ENSP00000434391.1Re-query CCDS DB by Nucleotide ID:ENST00000469477Re-query CCDS DB by Protein ID:ENSP00000434391
Original member Current member NCBI NM_178571.4 NP_848666.2 Accepted alive Link to Nucleotide Sequence:NM_178571.4Link to Protein Sequence:NP_848666.2Re-query CCDS DB by Nucleotide ID:NM_178571Re-query CCDS DB by Protein ID:NP_848666Link to BLAST:NP_848666.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848666.2 250 Q86UD7-1 250 99.6% 0 1

Chromosomal Locations for CCDS 42265.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15735349 15735423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15735597 15735679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15737484 15737523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15737997 15738077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15738280 15738387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15738721 15738830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15740100 15740148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15741122 15741241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15741942 15742028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGGAGATGGATGGGGACCCGTATAACCTGCCTGCCCAGGGGCAAGGCAATATCATCATTACTAAGTATG
AGCAGGGACACCGAGCTGGGGCAGCAGTGGACTTGGGGCATGAGCAGGTTGATGTCAGAAAATACACCAA
TAACCTCGGGATTGTGCATGAGATGGAGCTGCCCCACGTCAGTGCCCTGGAGGTGAAGCAAAGACGCAAG
GAAAGTAAACGTACCAACAAGTGGCAAAAGATGCTTGCAGACTGGACAAAATATAGGAGCACCAAGAAGC
TGTCTCAAAGAGTATACAAAGTCATTCCCCTGGCGGTACGGGGCCGGGCGTGGTCACTTTTGCTAGATAT
TGACAGAATCAAGTCCCAGAACCCAGGCAAATATAAGGTCATGAAGGAGAAGGGCAAGAGGTCCTCCAGA
ATCATCCACTGCATCCAGCTAGATGTCAGCCACACCCTGCAGAAACACATGATGTTCATACAAAGATTCG
GAGTCAAGCAGCAGGAATTATGTGACATCCTCGTGGCCTATTCTGCATATAACCCTGAGGTGGGCTACCA
CAGGGACCTGAGCCGCATCACTGCCATCCTCCTCCTGTGTCTGCCAGAGGAAGATGCTTTCTGGGCGCTT
ACCCAGTTGCTCGCTGGTGAGAGGCACTCCCTGTGGTATTCTACAGCCCAAATACTGCCTGGCTCGAGAG
GCTCCTATCGCACCAGGAGCAGGTGCTGCACAAGTCCTTCCCAAAGATCATGA

Translation (250 aa):
MEMDGDPYNLPAQGQGNIIITKYEQGHRAGAAVDLGHEQVDVRKYTNNLGIVHEMELPHVSALEVKQRRK
ESKRTNKWQKMLADWTKYRSTKKLSQRVYKVIPLAVRGRAWSLLLDIDRIKSQNPGKYKVMKEKGKRSSR
IIHCIQLDVSHTLQKHMMFIQRFGVKQQELCDILVAYSAYNPEVGYHRDLSRITAILLLCLPEEDAFWAL
TQLLAGERHSLWYSTAQILPGSRGSYRTRSRCCTSPSQRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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