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Report for CCDS1805.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1805.2 Public Homo sapiens 2 THUMPD2 24 110 108 CCDS HistoryNCBI Gene:80745Re-query CCDS DB by CCDS ID:1805.2Re-query CCDS DB by GeneID:80745See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 1805.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1805.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000505747.6 ENSP00000423933.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000505747.6Link to Ensembl Protein Viewer:ENSP00000423933.1Re-query CCDS DB by Nucleotide ID:ENST00000505747Re-query CCDS DB by Protein ID:ENSP00000423933
Original member Current member NCBI NM_025264.5 NP_079540.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025264.5Link to Protein Sequence:NP_079540.2Re-query CCDS DB by Nucleotide ID:NM_025264Re-query CCDS DB by Protein ID:NP_079540Link to BLAST:NP_079540.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079540.2 503 Q9BTF0-1 503 100% 0 0

Chromosomal Locations for CCDS 1805.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 39736735 39737059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39744370 39744478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39755295 39755409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39755889 39755960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39761331 39761418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39766057 39766109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39768424 39768501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39769710 39770119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39771505 39771640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 39779114 39779239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGTCGGAGGCGCGTGGAGAGCCAGGGTCCGGGCCTGAGGCTGGCGCCCGATTCTTCTGCACTGCGGGTC
GCGGCCTGGAGCCGTTCGTAATGCGAGAGGTGCGGGCGCGGCTGGCGGCCACGCAGGTTGAATATATTTC
AGGAAAGGTTTTTTTCACCACCTGTTCTGATTTGAATATGTTGAAGAAATTAAAATCTGCAGAAAGATTA
TTTTTGCTGATTAAAAAGCAGTTTCCACTTATTATTTCTTCTGTAAGTAAAGGAAAAATATTTAATGAAA
TGCAAAGACTTATAAATGAAGATCCAGGAAGTTGGTTGAATGCCATTTCAATTTGGAAAAATCTTCTTGA
ACTTGATGCAAAAAAGGAAAAACTTTCTCAGAGAGATGATAACCAACTAAAAAGAAAAGTGGGAGAAAAT
GAAATCATTGCAAAGAAATTAAAAATAGAACAAATGCAAAAGATAGAAGAGAATAGGGACTGCCAGCTGG
AAAAACAAATAAAAGAAGAAACTCTGGAGCAAAGAGATTTTACCACTAAAAGCGAAAAGTTTCAAGAAGA
AGAATTTCAGAATGACATAGAGAAAGCAATTGATACTCATAATCAGAATGACTTGACTTTCAGAGTATCT
TGTCGCTGCAGTGGAACTATTGGAAAGGCCTTCACTGCACAGGAGGTAGGAAAAGTAATTGGAATTGCTA
TTATGAAACACTTTGGATGGAAAGCAGACTTGAGGAATCCACAATTAGAGATCTTTATACATCTAAATGA
CATTTACTCTGTGGTGGGGATTCCTGTGTTCAGGGTTTCCCTAGCCAGCAGAGCTTACATCAAGACAGCT
GGACTGCGATCTACAATAGCGTGGGCAATGGCATCTCTGGCTGACATTAAGGCTGGTGCATTTGTTTTAG
ATCCAATGTGTGGACTTGGAACAATACTTTTGGAAGCTGCTAAAGAATGGCCAGATGTGTATTATGTAGG
TGCTGATGTCAGCGACTCACAGTTACTAGGTACTTGGGACAATCTGAAAGCTGCAGGCCTTGAGGATAAA
ATTGAATTACTTAAAATCTCTGTTATAGAATTGCCATTGCCTTCAGAAAGTGTTGATATTATTATTTCTG
ACATTCCATTTGGGAAAAAGTTTAAGTTAGGAAAAGACATCAAAAGCATTCTACAAGAAATGGAAAGAGT
GCTTCATGTTGGCGGAACCATTGTATTGTTGCTTAGTGAAGATCACCACAGGCGCCTTACAGATTGTAAA
GAGAGCAACATCCCTTTCAATTCCAAGGACAGTCACACAGATGAACCTGGAATTAAAAAGTGCTTGAATC
CTGAAGAAAAAACTGGTGCATTCAAGACAGCGTCAACTTCATTCGAAGCCAGTAACCACAAATTCTTAGA
CAGAATGTCACCATTTGGCTCCTTGGTACCAGTGGAATGCTACAAAGTTAGCCTTGGAAAGACAGATGCG
TTCATATGTAAATATAAGAAGTCGCACTCTTCTGGACTGTAG

Translation (503 aa):
MSEARGEPGSGPEAGARFFCTAGRGLEPFVMREVRARLAATQVEYISGKVFFTTCSDLNMLKKLKSAERL
FLLIKKQFPLIISSVSKGKIFNEMQRLINEDPGSWLNAISIWKNLLELDAKKEKLSQRDDNQLKRKVGEN
EIIAKKLKIEQMQKIEENRDCQLEKQIKEETLEQRDFTTKSEKFQEEEFQNDIEKAIDTHNQNDLTFRVS
CRCSGTIGKAFTAQEVGKVIGIAIMKHFGWKADLRNPQLEIFIHLNDIYSVVGIPVFRVSLASRAYIKTA
GLRSTIAWAMASLADIKAGAFVLDPMCGLGTILLEAAKEWPDVYYVGADVSDSQLLGTWDNLKAAGLEDK
IELLKISVIELPLPSESVDIIISDIPFGKKFKLGKDIKSILQEMERVLHVGGTIVLLLSEDHHRRLTDCK
ESNIPFNSKDSHTDEPGIKKCLNPEEKTGAFKTASTSFEASNHKFLDRMSPFGSLVPVECYKVSLGKTDA
FICKYKKSHSSGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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