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Report for CCDS4042.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4042.1 Public Homo sapiens 5 LHFPL2 24 110 108 CCDS HistoryNCBI Gene:10184Re-query CCDS DB by CCDS ID:4042.1Re-query CCDS DB by GeneID:10184See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4042.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380345.7 ENSP00000369702.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380345.7Link to Ensembl Protein Viewer:ENSP00000369702.2Re-query CCDS DB by Nucleotide ID:ENST00000380345Re-query CCDS DB by Protein ID:ENSP00000369702
Original member Current member EBI ENST00000515007.6 ENSP00000425906.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000515007.6Link to Ensembl Protein Viewer:ENSP00000425906.1Re-query CCDS DB by Nucleotide ID:ENST00000515007Re-query CCDS DB by Protein ID:ENSP00000425906
Original member Current member NCBI NM_005779.3 NP_005770.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005779.3Link to Protein Sequence:NP_005770.1Re-query CCDS DB by Nucleotide ID:NM_005779Re-query CCDS DB by Protein ID:NP_005770Link to BLAST:NP_005770.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005770.1 228 Q6ZUX7 228 100% 0 0

Chromosomal Locations for CCDS 4042.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 78488897 78489153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 78509784 78510213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGTGTCATGTCATTGTCACCTGTCGCTCGATGCTCTGGACCTTGCTGAGTATTGTGGTGGCTTTTGCCG
AGCTCATTGCCTTCATGAGTGCAGACTGGCTGATCGGGAAAGCGAGGAGCCGCGGCGGCGTGGAGCCGGC
GGGCCCGGGCGGGGGCTCCCCGGAGCCCTACCACCCCACCCTGGGCATCTACGCCCGCTGCATCCGGAAC
CCAGGGGTGCAGCACTTCCAGCGGGACACGCTGTGCGGGCCCTACGCCGAGAGCTTCGGCGAGATCGCCA
GCGGCTTCTGGCAGGCCACAGCTATTTTCCTGGCTGTGGGAATCTTTATTCTCTGCATGGTGGCCTTGGT
GTCCGTCTTCACCATGTGTGTACAGAGCATCATGAAGAAAAGCATCTTCAATGTCTGTGGGCTGTTGCAA
GGAATTGCAGGTCTATTCCTTATCCTCGGTTTGATACTCTACCCTGCTGGCTGGGGTTGCCAGAAGGCCA
TAGACTACTGTGGACATTATGCATCTGCCTACAAACCTGGAGACTGCTCCTTGGGCTGGGCCTTTTATAC
CGCCATTGGGGGCACAGTCCTCACTTTCATCTGTGCTGTCTTCTCTGCACAAGCAGAAATTGCAACCTCT
AGTGACAAAGTACAGGAAGAAATTGAAGAGGGGAAAAATCTGATCTGCCTCCTTTAG

Translation (228 aa):
MCHVIVTCRSMLWTLLSIVVAFAELIAFMSADWLIGKARSRGGVEPAGPGGGSPEPYHPTLGIYARCIRN
PGVQHFQRDTLCGPYAESFGEIASGFWQATAIFLAVGIFILCMVALVSVFTMCVQSIMKKSIFNVCGLLQ
GIAGLFLILGLILYPAGWGCQKAIDYCGHYASAYKPGDCSLGWAFYTAIGGTVLTFICAVFSAQAEIATS
SDKVQEEIEEGKNLICLL


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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