NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS6208.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6208.1 Public Homo sapiens 8 LACTB2 24 110 108 CCDS HistoryNCBI Gene:51110Re-query CCDS DB by CCDS ID:6208.1Re-query CCDS DB by GeneID:51110See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6208.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276590.5 ENSP00000276590.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000276590.5Link to Ensembl Protein Viewer:ENSP00000276590.4Re-query CCDS DB by Nucleotide ID:ENST00000276590Re-query CCDS DB by Protein ID:ENSP00000276590
Original member Current member EBI ENST00000522447.5 ENSP00000428801.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000522447.5Link to Ensembl Protein Viewer:ENSP00000428801.1Re-query CCDS DB by Nucleotide ID:ENST00000522447Re-query CCDS DB by Protein ID:ENSP00000428801
Original member Current member NCBI NM_016027.3 NP_057111.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016027.3Link to Protein Sequence:NP_057111.1Re-query CCDS DB by Nucleotide ID:NM_016027Re-query CCDS DB by Protein ID:NP_057111Link to BLAST:NP_057111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057111.1 288 Q53H82 288 100% 0 0

Chromosomal Locations for CCDS 6208.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 70637860 70637903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70638548 70638629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70640902 70641050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70644065 70644243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70657756 70657882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70661734 70661897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 70668999 70669120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGTAACCCGG
GTCCCATGACCCTCCAAGGCACCAACACCTACCTAGTGGGGACCGGCCCCAGGAGAATCCTCATTGACAC
TGGAGAACCAGCAATTCCAGAATACATCAGCTGTTTAAAGCAGGCTCTAACTGAATTTAACACAGCAATC
CAGGAAATTGTAGTGACTCACTGGCACCGAGATCATTCTGGAGGCATAGGAGATATTTGTAAAAGCATCA
ATAATGACACTACCTATTGCATTAAAAAACTCCCACGGAATCCTCAGAGAGAAGAAATTATAGGAAATGG
AGAGCAACAATATGTTTATCTGAAAGATGGAGATGTGATTAAGACTGAGGGAGCCACTCTAAGAGTTCTA
TATACCCCTGGCCACACTGATGATCACATGGCTCTACTCTTAGAAGAGGAAAATGCTATCTTTTCTGGAG
ATTGCATCCTAGGGGAAGGAACAACGGTATTTGAAGACCTCTATGATTATATGAACTCTTTAAAAGAGTT
ATTGAAAATCAAAGCTGATATTATATATCCAGGACATGGCCCAGTAATTCATAATGCTGAAGCTAAAATT
CAACAATACATTTCTCACAGAAATATTCGAGAGCAGCAAATTCTTACATTATTTCGTGAGAACTTTGAGA
AATCATTTACAGTAATGGAGCTTGTAAAAATTATTTACAAGAATACTCCTGAGAATTTACATGAAATGGC
TAAACATAATCTCTTACTTCATTTGAAAAAACTAGAAAAAGAAGGAAAAATATTTAGCAACACAGATCCT
GACAAGAAATGGAAAGCTCATCTTTAG

Translation (288 aa):
MAAVLQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLKQALTEFNTAI
QEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQYVYLKDGDVIKTEGATLRVL
YTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLYDYMNSLKELLKIKADIIYPGHGPVIHNAEAKI
QQYISHRNIREQQILTLFRENFEKSFTVMELVKIIYKNTPENLHEMAKHNLLLHLKKLEKEGKIFSNTDP
DKKWKAHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH