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Report for CCDS76760.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76760.1 Public Homo sapiens 15 TCF12 24 110 108 CCDS HistoryNCBI Gene:6938Re-query CCDS DB by CCDS ID:76760.1Re-query CCDS DB by GeneID:6938See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76760.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000543579.5 ENSP00000440017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000543579.5Link to Ensembl Protein Viewer:ENSP00000440017.1Re-query CCDS DB by Nucleotide ID:ENST00000543579Re-query CCDS DB by Protein ID:ENSP00000440017
Original member Current member NCBI NM_001306219.3 NP_001293148.1 Accepted alive Link to Nucleotide Sequence:NM_001306219.3Link to Protein Sequence:NP_001293148.1Re-query CCDS DB by Nucleotide ID:NM_001306219Re-query CCDS DB by Protein ID:NP_001293148Link to BLAST:NP_001293148.1

Chromosomal Locations for CCDS 76760.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 57219522 57219590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57231152 57231257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57232291 57232430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57232712 57232856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57234043 57234107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57243472 57243550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57251350 57251423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57252421 57252492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57253262 57253468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57262094 57262208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57263112 57263274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57273030 57273262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 57282445 57282587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGTATTGTGCTTATCCTGTCCCTGGAATGGGCAGCAATTCTTTGATGTATTACTACAATGGGAAAACGG
TATATGCACCATCCCCAAATTCAGATGATTTCAACCGTGAATCTCCTAGTTATCCATCTCCTAAGCCACC
AACCAGTATGTTCGCTAGCACTTTCTTTATGCAAGATGGGACCCACAATTCTTCTGACCTTTGGAGTTCA
TCAAATGGGATGAGCCAGCCTGGTTTTGGTGGAATTCTGGGGACCTCCACTTCCCACATGTCTCAATCCA
GTAGTTATGGCAACCTTCATTCACATGACCGCTTGAGTTATCCTCCACACTCAGTTTCACCAACAGACAT
AAACACGAGTCTTCCACCAATGTCCAGCTTTCATCGCGGCAGTACCAGCAGTTCACCTTACGTTGCTGCC
TCACACACTCCTCCCATCAATGGATCAGACAGCATTCTAGGAACCAGAGGGAATGCTGCTGGAAGCTCAC
AGACAGGTGATGCACTTGGAAAGGCTTTGGCATCTATTTATTCTCCTGACCATACCAGCAGTAGTTTTCC
GTCAAATCCATCAACACCAGTTGGATCACCTTCACCTCTCACAGGTACCAGTCAGTGGCCAAGACCTGGA
GGGCAAGCACCTTCATCCCCAAGCTATGAAAACTCACTCCACTCCCTGAAAAATCGAGTTGAGCAGCAAC
TTCACGAGCATTTGCAAGATGCAATGTCCTTCTTAAAGGATGTCTGTGAGCAGTCTCGAATGGAGGATCG
TTTAGACAGACTGGATGATGCAATCCATGTGCTGCGGAACCATGCTGTGGGACCTTCCACCAGTTTGCCT
GCTGGTCACAGTGATATACATAGTTTATTGGGACCATCCCATAATGCACCAATTGGAAGCCTCAATTCAA
ACTATGGAGGATCAAGCCTTGTTGCAAGCAGTCGATCAGCTTCAATGGTTGGAACTCATCGGGAAGACTC
TGTCAGTCTCAATGGCAATCATTCAGTCCTGTCTAGTACAGTCACTACTTCAAGCACAGACCTGAACCAT
AAAACACAAGAAAATTATAGAGGTGGCTTGCAAAGTCAGTCTGGAACTGTTGTTACAACAGAAATCAAGA
CTGAAAACAAAGAAAAGGATGAAAACCTTCATGAACCTCCTTCATCAGATGACATGAAGTCAGATGATGA
ATCCTCCCAAAAAGATATCAAGGTTTCATCTAGAGGCAGAACAAGCAGTACTAATGAAGATGAGGATTTG
AACCCTGAACAGAAGATAGAAAGGGAGAAGGAGAGGCGGATGGCTAACAATGCCAGAGAACGCTTACGCG
TGCGGGATATTAATGAAGCATTCAAAGAGCTTGGCCGAATGTGTCAGCTTCACTTGAAGAGTGAAAAACC
CCAAACAAAACTCCTTATTCTTCATCAAGCCGTGGCAGTCATCCTTAGTCTAGAACAGCAAGTCAGAGAG
AGGAACCTTAACCCCAAAGCAGCCTGCCTTAAGAGAAGGGAAGAAGAAAAAGTTTCTGCCGTATCGGCAG
AGCCGCCAACCACACTGCCAGGAACCCATCCTGGGCTTAGTGAAACTACCAACCCTATGGGTCATATGTA
A

Translation (536 aa):
MYCAYPVPGMGSNSLMYYYNGKTVYAPSPNSDDFNRESPSYPSPKPPTSMFASTFFMQDGTHNSSDLWSS
SNGMSQPGFGGILGTSTSHMSQSSSYGNLHSHDRLSYPPHSVSPTDINTSLPPMSSFHRGSTSSSPYVAA
SHTPPINGSDSILGTRGNAAGSSQTGDALGKALASIYSPDHTSSSFPSNPSTPVGSPSPLTGTSQWPRPG
GQAPSSPSYENSLHSLKNRVEQQLHEHLQDAMSFLKDVCEQSRMEDRLDRLDDAIHVLRNHAVGPSTSLP
AGHSDIHSLLGPSHNAPIGSLNSNYGGSSLVASSRSASMVGTHREDSVSLNGNHSVLSSTVTTSSTDLNH
KTQENYRGGLQSQSGTVVTTEIKTENKEKDENLHEPPSSDDMKSDDESSQKDIKVSSRGRTSSTNEDEDL
NPEQKIEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLLILHQAVAVILSLEQQVRE
RNLNPKAACLKRREEEKVSAVSAEPPTTLPGTHPGLSETTNPMGHM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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