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Report for CCDS58474.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58474.1 Public Homo sapiens 16 LRRC36 24 110 108 CCDS HistoryNCBI Gene:55282Re-query CCDS DB by CCDS ID:58474.1Re-query CCDS DB by GeneID:55282See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58474.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000563189.5 ENSP00000455103.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563189.5Link to Ensembl Protein Viewer:ENSP00000455103.1Re-query CCDS DB by Nucleotide ID:ENST00000563189Re-query CCDS DB by Protein ID:ENSP00000455103
Original member Current member NCBI NM_001161575.2 NP_001155047.1 Accepted alive Link to Nucleotide Sequence:NM_001161575.2Link to Protein Sequence:NP_001155047.1Re-query CCDS DB by Nucleotide ID:NM_001161575Re-query CCDS DB by Protein ID:NP_001155047Link to BLAST:NP_001155047.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155047.1 633 Q1X8D7-2 633 100% 0 0

Chromosomal Locations for CCDS 58474.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67347467 67347591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67350202 67350290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67363590 67363714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67365304 67365355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67367017 67367457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67370944 67371242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67375247 67375412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67376727 67376872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67378589 67378712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67382133 67382247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67384870 67385089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1902 nt):
ATGCTCAGACCACGGTTTTTGCCTCCAGATGACCGAACTGTACGTGAAGGTGAGAGAAAAGCTGCCAAGC
TGCATTTTAGTCAGTTGGGCAACAGTGAAAATTTTCTTTTAGAGGTGGAAAAAAGCTCTAGGGAGAAGAC
AATGAAAAACTGTGTAACAGGTGAGAGCTCTGCATCAAAAGTCAGTGCTAATGTTGACAGCAGGATTGAA
ATGGACTCAAACAAAGGACTTTTTATTCCCTTCCCCAACCGGGAAATAAAGGATTCCCTAAGTACTTCTG
CAACTCAGGGCAATGGTACACGTGATCAGAAATTAGACACCTTCCCACTGGGGACACAGACACAGGAAGT
AGCAAGAAGGGAGATGCCAAGTGACAATCACCAGGAAGATGAGTTCAGACACTACTCGCCTCGTCAGTCC
ACAGTCCGATCCCCAGAGAAGATGACTAGAGAAGGGTACCAAGTATCTTTTTTGGACAATAAGTCTTCAG
GTTCTTCTCCAGAAAAGGAATTGATACCAAAACCTGATACTTTTCATCTTACCCATGATGCCTCATTGAG
TAAATGCCTGGATGTGGGTGATTCTAGCCAGATCCATCCCTATCAGTTACCTTCAGATGTTGGTCTGGAA
AATTATGACAGTTGTTATTCTCAAACTCTATCCCTGCATGGAAGTCTTGGTAAAAGGCCTCAGAGAAGCA
AGAACTATCAAGAGTATAGCATAAAGCCTTCAAATGACATAAAGACCACCGCTTCACATTCCTGTGGAGA
CTTATTAACTTCTCTGTCAAACCCTGACTCCAGCACTGGAAGGCTTTTGAAGCTTAGTTCAGATCTGTAT
GCCACAACCCATTTCAACAGTGACCCTGCTGTACTTGTCAATGTAGAGCAACAATTATCTACCAGCCTGG
ATGATTTAACACCAGCACATGGTTCTGTCCCAAACAACGCTGTCCTGGGAAACAGGACAACTCCTCTGCG
GACACTGCTGTTGTCTCCTGGGACTTCAGAACACAGAAAGATTTTTACCAAGAGGTCACTAAGCCCATCG
AAGAGAGGATTCAAATGGAAGGACAATATCCTTGCCAACCTGAATCTAAAGCATGGTTTCCAAGATGCTA
CAGGCAGCGAGCCTCTCTCTAGTGACCTGGGTAGTTTGCACGGTTTGGCTGGAAACCACAGTCCCCCCAT
CTCTGCCAGAACCCCCCATGTGGCCACTGTCCTCAGACAGCTCCTGGAGCTTGTGGATAAGCACTGGAAT
GGCTCCGGCTCCCTCCTCCTCAACAAGAAGTTTCTCGGTCCTGCCCGAGATTTGCTTCTGTCTTTGGTAG
TCCCGGCTCCTTCTCAGCCGAGGTGTTGCTCACATCCTGAAGACACGATGAAAGCATTCTGCAGGAGGGA
GCTTGAACTGAAGGAGGCTGCGCAGCTGGTCCCTAATGACATGGAAAGTTTGAAGCAAAAACTGGTCAGA
GTGCTGGAGGAAAACCTCATTTTGTCAGAAAAAATTCAACAGTTGGAGGAAGGTGCTGCCATCTCAATTG
TGAGTGGGCAACAGTCACATACTTATGATGATCTTCTGCACAAAAACCAACAGCTGACCATGCAGGTGGC
TTGCCTGAACCAGGAGCTTGCCCAGCTGAAAAAGCTGGAGAAGACAGTTGCCATTCTCCATGAAAGTCAG
AGATCCCTGGTGGTAACTAATGAGTATCTGCTGCAGCAGCTGAATAAGGAGCCAAAAGGTTATTCCGGGA
AAGCGCTCCTGCCTCCTGAGAAGGGTCATCATCTGGGGAGATCATCGCCCTTTGGGAAAAGCACGTTGTC
TTCCTCCTCACCAGTGGCACATGAGACTGGTCAGTATCTAATACAGAGCGTCTTGGATGCTGCCCCAGAG
CCTGGCTTATAG

Translation (633 aa):
MLRPRFLPPDDRTVREGERKAAKLHFSQLGNSENFLLEVEKSSREKTMKNCVTGESSASKVSANVDSRIE
MDSNKGLFIPFPNREIKDSLSTSATQGNGTRDQKLDTFPLGTQTQEVARREMPSDNHQEDEFRHYSPRQS
TVRSPEKMTREGYQVSFLDNKSSGSSPEKELIPKPDTFHLTHDASLSKCLDVGDSSQIHPYQLPSDVGLE
NYDSCYSQTLSLHGSLGKRPQRSKNYQEYSIKPSNDIKTTASHSCGDLLTSLSNPDSSTGRLLKLSSDLY
ATTHFNSDPAVLVNVEQQLSTSLDDLTPAHGSVPNNAVLGNRTTPLRTLLLSPGTSEHRKIFTKRSLSPS
KRGFKWKDNILANLNLKHGFQDATGSEPLSSDLGSLHGLAGNHSPPISARTPHVATVLRQLLELVDKHWN
GSGSLLLNKKFLGPARDLLLSLVVPAPSQPRCCSHPEDTMKAFCRRELELKEAAQLVPNDMESLKQKLVR
VLEENLILSEKIQQLEEGAAISIVSGQQSHTYDDLLHKNQQLTMQVACLNQELAQLKKLEKTVAILHESQ
RSLVVTNEYLLQQLNKEPKGYSGKALLPPEKGHHLGRSSPFGKSTLSSSSPVAHETGQYLIQSVLDAAPE
PGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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