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Report for CCDS42114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42114.1 Public Homo sapiens 16 CDIP1 24 110 108 CCDS HistoryNCBI Gene:29965Re-query CCDS DB by CCDS ID:42114.1Re-query CCDS DB by GeneID:29965See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42114.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399599.7 ENSP00000382508.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399599.7Link to Ensembl Protein Viewer:ENSP00000382508.2Re-query CCDS DB by Nucleotide ID:ENST00000399599Re-query CCDS DB by Protein ID:ENSP00000382508
Original member Current member EBI ENST00000563332.6 ENSP00000454994.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000563332.6Link to Ensembl Protein Viewer:ENSP00000454994.1Re-query CCDS DB by Nucleotide ID:ENST00000563332Re-query CCDS DB by Protein ID:ENSP00000454994
Original member Current member EBI ENST00000567695.6 ENSP00000457877.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000567695.6Link to Ensembl Protein Viewer:ENSP00000457877.1Re-query CCDS DB by Nucleotide ID:ENST00000567695Re-query CCDS DB by Protein ID:ENSP00000457877
Original member Current member NCBI NM_001199054.2 NP_001185983.1 Accepted alive Link to Nucleotide Sequence:NM_001199054.2Link to Protein Sequence:NP_001185983.1Re-query CCDS DB by Nucleotide ID:NM_001199054Re-query CCDS DB by Protein ID:NP_001185983Link to BLAST:NP_001185983.1
Original member Current member NCBI NM_013399.3 NP_037531.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013399.3Link to Protein Sequence:NP_037531.2Re-query CCDS DB by Nucleotide ID:NM_013399Re-query CCDS DB by Protein ID:NP_037531Link to BLAST:NP_037531.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001185983.1 208 Q9H305-1 208 100% 0 0
NP_037531.2 208 Q9H305-1 208 100% 0 0

Chromosomal Locations for CCDS 42114.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4512572 4512683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4512791 4513064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4513696 4513851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4514046 4514130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (627 nt):
ATGTCCAGCGAGCCTCCCCCTCCTTATCCTGGGGGCCCCACAGCCCCACTTCTGGAAGAGAAAAGTGGAG
CCCCGCCCACCCCAGGCCGTTCCTCCCCAGCTGTGATGCAGCCCCCTCCAGGCATGCCACTGCCCCCTGC
GGACATTGGCCCCCCACCCTATGAGCCGCCGGGTCACCCAATGCCCCAGCCTGGCTTCATCCCACCACAC
ATGAGTGCAGATGGCACCTACATGCCTCCGGGTTTCTACCCTCCTCCAGGCCCCCACCCACCCATGGGCT
ACTACCCCCCAGGGCCCTACACGCCAGGGCCCTACCCTGGCCCTGGGGGCCACACAGCCACAGTCCTGGT
CCCTTCAGGAGCTGCCACCACGGTGACAGTGCTGCAGGGAGAGATCTTTGAGGGAGCGCCTGTGCAGACG
GTGTGTCCCCACTGCCAGCAGGCCATCACCACCAAGATCTCCTACGAGATTGGCTTGATGAATTTCGTGC
TGGGTTTCTTCTGTTGCTTCATGGGATGTGATCTGGGCTGCTGCCTGATCCCCTGCCTCATCAATGACTT
CAAGGATGTGACGCACACATGCCCCAGCTGCAAAGCCTACATCTACACGTACAAGCGCCTGTGCTAA

Translation (208 aa):
MSSEPPPPYPGGPTAPLLEEKSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFIPPH
MSADGTYMPPGFYPPPGPHPPMGYYPPGPYTPGPYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQT
VCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRLC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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