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Report for CCDS45121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45121.1 Public Homo sapiens 14 SYT16 24 110 108 CCDS HistoryNCBI Gene:83851Re-query CCDS DB by CCDS ID:45121.1Re-query CCDS DB by GeneID:83851See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45121.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000568344.5 ENSP00000478637.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000568344.5Link to Ensembl Protein Viewer:ENSP00000478637.1Re-query CCDS DB by Nucleotide ID:ENST00000568344Re-query CCDS DB by Protein ID:ENSP00000478637
Original member Current member EBI ENST00000683842.1 ENSP00000508274.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683842.1Link to Ensembl Protein Viewer:ENSP00000508274.1Re-query CCDS DB by Nucleotide ID:ENST00000683842Re-query CCDS DB by Protein ID:ENSP00000508274
Original member Current member NCBI NM_001367656.1 NP_001354585.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001367656.1Link to Protein Sequence:NP_001354585.1Re-query CCDS DB by Nucleotide ID:NM_001367656Re-query CCDS DB by Protein ID:NP_001354585Link to BLAST:NP_001354585.1
Original member Current member NCBI NM_001367661.1 NP_001354590.1 Accepted alive Link to Nucleotide Sequence:NM_001367661.1Link to Protein Sequence:NP_001354590.1Re-query CCDS DB by Nucleotide ID:NM_001367661Re-query CCDS DB by Protein ID:NP_001354590Link to BLAST:NP_001354590.1
Original member Current member NCBI NM_001367663.1 NP_001354592.1 Accepted alive Link to Nucleotide Sequence:NM_001367663.1Link to Protein Sequence:NP_001354592.1Re-query CCDS DB by Nucleotide ID:NM_001367663Re-query CCDS DB by Protein ID:NP_001354592Link to BLAST:NP_001354592.1
Original member Current member NCBI NM_001387087.1 NP_001374016.1 Accepted alive Link to Nucleotide Sequence:NM_001387087.1Link to Protein Sequence:NP_001374016.1Re-query CCDS DB by Nucleotide ID:NM_001387087Re-query CCDS DB by Protein ID:NP_001374016Link to BLAST:NP_001374016.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001354585.1 645 Q17RD7-1 645 100% 0 0
NP_001354590.1 645 Q17RD7-1 645 100% 0 0
NP_001354592.1 645 Q17RD7-1 645 100% 0 0
NP_001374016.1 645 Q17RD7-1 645 100% 0 0

Chromosomal Locations for CCDS 45121.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 61996020 61996542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62069603 62069815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62075135 62075391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62080834 62081274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62084196 62084385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 62100394 62100707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1938 nt):
ATGGTGTTGGCCATGGCGTCTCAGGATGTTCAGAACTTCTTCCAGCCTTTCTCTTCCTGGATATCTCGGG
TTTATGAAGCTCTCCAGCAAGCAGGAGATATGTTATCTGCTTCGCTGGTTAACATAAGCAAACAAGACTC
TAAATTGAGTGACAAACTAGATCAGGACTTAGATAATATTCAGATTCAGGAAACGTACTTTGAAGATGAA
GAACAAGACAATGATTGGAGTCAAGAGGATGCAAATTCCTTGTTTCTTGAAGTGGATCATTTCTCATGTT
GTAATAGTGATTTGCAGGACTCTGCCCAAAATTCAAGCCCAAGCCTTAGCCAACATGCAAAGGACTCATG
TTCCACAATGTCCCAGTGGCCCAATTGGGCCAGTGATGACCGCAAGTTACCACATGTGCTTTCTTCTATT
GCGGAGGAAGAGCATCACCTTGAAAAGCAAAGAAGTGGCCTTCAACATGGCTTTGACAGCCAGCTCCCTG
GTACTTTAGAAACTGTTAATGGAAAAAAGCAAGTCAACAGCTTTGGGGATGACGAAGAGCTGTCCACATC
TTCTGACAGTGACGAGGAGGTGATCAAACAATTTGAGATTTCCGTGTCCCGGTCCCAGAGTTTCCGTTCA
GTGACATCTGAGAAAGGAAAGCAGACAGGATTGGAGCAGAAACCAAAATTCAGCCGTTCGTTGTTGACAC
ACGGAGAAGATGGCACAGAAGTATCTGCCTGCGAAGATTTGGATGGAGCCAGCCAACGGCGTTATTCTGA
GAATCTCTCCTACGGTGAAGATGACCACATCCCTGCTCACTCACAGTCCCCATGTGAAAGAGGGGATGCC
AAACACCACGGCACATCTCACCAAGAGTCCAGTGTGGTCCAAAGCCTCAGGCGCCAATCCACAGAGGGCA
GCTTGGAGATGGAGACAGCTTTTAATAGCCGGGGATTTGAAGATTCCTATGCCACTGACAGCTCCTCCAT
GTGGAGTCCAGAGGAACAGGACAGGACCAATTTGCAGGTGCCATCCGGGGTCTCAGAGCCCATCTCAAAG
TGTGGTGACCTAGATGTCATCTTTGAATATAGAGCCGCCAGCCAGAAGCTCACAGTGACCATTGTGAGGG
CACAGGGCCTCCCAGATAAGGACCGAAGTGGTGTCAACTCCTGGCAAGTTCATGTAGTGCTGCTGCCTGG
TAAGAAACACAGGGGCAGGACGAACATACAGAGAGGGCCCAACCCCGTCTTCAGGGAGAAGGTCACCTTT
GCCAAGCTGGAGCCCAGAGATGTGGCTGCCTGTGCTGTCCGCTTCCGCCTGTACGCTGCCCGGAAGATGA
CCCGAGAGAGAATGATGGGAGAGAAACTATTCTATCTCAGCCACCTGCACCCAGAAGGGGAAATGAAAGT
GACTCTGGTTCTGGAGCCAAGAAGTAATATAAGCAGTGGAGGGTCTCCGCTCAGCCCATCTGCGGTTTCT
CACAGTGATAGTACTTCATCCACGCAGTCGCTGTCTCATGGAGGGGCGCCAGAGCTGTTGGTGGGGCTCT
CGTACAATGCCACAACGGGGCGATTATCTGTGGAAATGATCAAAGGCAGCCATTTCCGAAACCTCGCTGT
TAACCGAGCACCTGATACATATGGAAAACTCTTTCTCCTCAATTCTGTGGGTCAAGAGATGTCCCGTTGC
AAGACGTCCATTCGGCGTGGTCAGCCCAATCCTGTCTATAAGGAGACCTTTGTTTTCCAGGTGGCCCTCT
TTCAGCTGTCTGATGTCACGTTGATGATTTCCGTTTATAACAGGCGTACTATGAAGCGTAAAGAGATGAT
TGGCTGGATTGCCCTGGGCCAGAACAGCAGTGGAGAGGAGGAACAAGATCACTGGGAGGAGATGAAGGAA
ACCAAAGGCCAGCAGATCTGCAGATGGCACACTTTGCTGGAATCCTAG

Translation (645 aa):
MVLAMASQDVQNFFQPFSSWISRVYEALQQAGDMLSASLVNISKQDSKLSDKLDQDLDNIQIQETYFEDE
EQDNDWSQEDANSLFLEVDHFSCCNSDLQDSAQNSSPSLSQHAKDSCSTMSQWPNWASDDRKLPHVLSSI
AEEEHHLEKQRSGLQHGFDSQLPGTLETVNGKKQVNSFGDDEELSTSSDSDEEVIKQFEISVSRSQSFRS
VTSEKGKQTGLEQKPKFSRSLLTHGEDGTEVSACEDLDGASQRRYSENLSYGEDDHIPAHSQSPCERGDA
KHHGTSHQESSVVQSLRRQSTEGSLEMETAFNSRGFEDSYATDSSSMWSPEEQDRTNLQVPSGVSEPISK
CGDLDVIFEYRAASQKLTVTIVRAQGLPDKDRSGVNSWQVHVVLLPGKKHRGRTNIQRGPNPVFREKVTF
AKLEPRDVAACAVRFRLYAARKMTRERMMGEKLFYLSHLHPEGEMKVTLVLEPRSNISSGGSPLSPSAVS
HSDSTSSTQSLSHGGAPELLVGLSYNATTGRLSVEMIKGSHFRNLAVNRAPDTYGKLFLLNSVGQEMSRC
KTSIRRGQPNPVYKETFVFQVALFQLSDVTLMISVYNRRTMKRKEMIGWIALGQNSSGEEEQDHWEEMKE
TKGQQICRWHTLLES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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