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Report for CCDS12694.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12694.1 Public Homo sapiens 19 NPAS1 24 110 108 CCDS HistoryNCBI Gene:4861Re-query CCDS DB by CCDS ID:12694.1Re-query CCDS DB by GeneID:4861See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12694.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449844.6 ENSP00000405290.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449844.6Link to Ensembl Protein Viewer:ENSP00000405290.1Re-query CCDS DB by Nucleotide ID:ENST00000449844Re-query CCDS DB by Protein ID:ENSP00000405290
Original member Current member EBI ENST00000602212.6 ENSP00000469142.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000602212.6Link to Ensembl Protein Viewer:ENSP00000469142.1Re-query CCDS DB by Nucleotide ID:ENST00000602212Re-query CCDS DB by Protein ID:ENSP00000469142
Original member Current member NCBI NM_002517.4 NP_002508.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002517.4Link to Protein Sequence:NP_002508.2Re-query CCDS DB by Nucleotide ID:NM_002517Re-query CCDS DB by Protein ID:NP_002508Link to BLAST:NP_002508.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002508.2 590 Q99742-1 590 100% 0 0

Chromosomal Locations for CCDS 12694.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47021048 47021169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47021612 47021847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47032278 47032351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47032643 47032732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47035964 47036129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47039036 47039151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47039407 47039564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47040444 47040550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47040978 47041125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47042810 47042904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47045191 47045651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1773 nt):
ATGGCGGCCCCCTATCCCGGCAGTGGCGGCGGAAGCGAGGTCAAATGCGTGGGAGGCCGCGGCGCCAGCG
TCCCCTGGGACTTTCTACCCGGGCTGATGGTCAAGGCGCCGTCCGGACCGTGCCTGCAGGCGCAGCGCAA
GGAGAAGTCCCGGAACGCGGCGCGCTCGCGGCGCGGGAAGGAGAACCTGGAGTTCTTCGAGCTGGCCAAG
CTTCTCCCGCTGCCCGGCGCCATCTCCAGCCAGCTGGACAAGGCTTCCATCGTGCGCCTCAGCGTCACCT
ACCTCCGCCTGCGCCGGTTCGCCGCGCTGGGGGCGCCGCCCTGGGGGCTGAGAGCCGCGGGGCCGCCAGC
TGGCCTCGCCCCAGGCCGCCGCGGCCCCGCAGCGCTGGTCTCCGAAGTCTTCGAGCAGCACCTGGGAGGT
CACATCTTGCAGTCCCTGGATGGCTTTGTGTTCGCCTTGAACCAGGAAGGAAAATTCCTCTACATCTCAG
AGACAGTCTCCATCTATCTGGGTCTCTCACAGGTGGAGATGACGGGCAGCAGCGTCTTCGACTACATTCA
CCCTGGGGACCACTCAGAGGTGCTGGAGCAACTGGGGCTGCGGACGCCGACGCCCGGCCCCCCAACCCCG
CCCTCCGTCTCCTCTTCCTCCTCCTCTTCCTCTTCGCTTGCAGATACCCCCGAGATCGAGGCCAGCCTCA
CCAAGGTGCCCCCCTCCTCCCTGGTCCAGGAGCGCTCCTTCTTTGTCCGCATGAAATCCACGCTCACCAA
GAGGGGGCTGCACGTCAAGGCCTCAGGGTACAAGGTCATCCACGTGACTGGGCGCCTTCGGGCCCACGCC
CTGGGCCTTGTGGCCCTCGGGCACACGTTGCCCCCGGCCCCCCTGGCTGAGCTGCCACTCCATGGACACA
TGATCGTCTTCCGTCTCAGCCTGGGTCTCACCATCCTTGCTTGTGAGAGCAGAGTCAGCGACCACATGGA
CCTGGGGCCCTCAGAGCTGGTGGGCCGCAGCTGCTACCAGTTTGTCCACGGACAGGACGCCACGAGGATC
CGCCAGAGCCACGTGGACTTGCTGGACAAGGGTCAGGTGATGACTGGTTACTACCGTTGGCTGCAGCGTG
CCGGGGGCTTCGTGTGGCTGCAGTCTGTGGCCACAGTGGCTGGGAGCGGGAAGAGCCCCGGGGAGCACCA
TGTGCTTTGGGTCAGCCACGTGCTCAGCCAAGCCGAGGGTGGCCAAACTCCTTTGGATGCCTTCCAGCTT
CCAGCCAGCGTGGCCTGTGAGGAGGCATCCAGCCCGGGGCCAGAGCCCACAGAGCCGGAGCCTCCGACGG
AAGGGAAGCAGGCTGCCCCAGCGGAGAACGAGGCCCCCCAGACCCAGGGCAAACGCATCAAAGTGGAGCC
CGGCCCGAGGGAAACCAAAGGCTCCGAGGACAGTGGCGACGAGGATCCCTCCAGCCACCCGGCCACACCG
AGGCCCGAGTTCACCTCTGTCATCCGGGCAGGGGTCCTGAAGCAGGATCCGGTGCGGCCATGGGGCCTGG
CGCCTCCCGGGGACCCCCCGCCCACCCTCCTGCACGCGGGCTTCCTGCCGCCGGTGGTGCGGGGCCTGTG
CACACCCGGCACCATCCGCTACGGCCCCGCGGAGCTGGGCCTGGTGTACCCGCACCTGCAGAGGCTGGGT
CCGGGCCCCGCGCTCCCGGAGGCCTTTTACCCGCCCCTGGGCCTGCCCTACCCGGGGCCCGCGGGCACCA
GGCTGCCGCGGAAGGGGGACTGA

Translation (590 aa):
MAAPYPGSGGGSEVKCVGGRGASVPWDFLPGLMVKAPSGPCLQAQRKEKSRNAARSRRGKENLEFFELAK
LLPLPGAISSQLDKASIVRLSVTYLRLRRFAALGAPPWGLRAAGPPAGLAPGRRGPAALVSEVFEQHLGG
HILQSLDGFVFALNQEGKFLYISETVSIYLGLSQVEMTGSSVFDYIHPGDHSEVLEQLGLRTPTPGPPTP
PSVSSSSSSSSSLADTPEIEASLTKVPPSSLVQERSFFVRMKSTLTKRGLHVKASGYKVIHVTGRLRAHA
LGLVALGHTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMDLGPSELVGRSCYQFVHGQDATRI
RQSHVDLLDKGQVMTGYYRWLQRAGGFVWLQSVATVAGSGKSPGEHHVLWVSHVLSQAEGGQTPLDAFQL
PASVACEEASSPGPEPTEPEPPTEGKQAAPAENEAPQTQGKRIKVEPGPRETKGSEDSGDEDPSSHPATP
RPEFTSVIRAGVLKQDPVRPWGLAPPGDPPPTLLHAGFLPPVVRGLCTPGTIRYGPAELGLVYPHLQRLG
PGPALPEAFYPPLGLPYPGPAGTRLPRKGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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