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Report for CCDS41877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41877.1 Public Homo sapiens 13 N4BP2L1 24 110 108 CCDS HistoryNCBI Gene:90634Re-query CCDS DB by CCDS ID:41877.1Re-query CCDS DB by GeneID:90634See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41877.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380139.8 ENSP00000369484.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380139.8Link to Ensembl Protein Viewer:ENSP00000369484.3Re-query CCDS DB by Nucleotide ID:ENST00000380139Re-query CCDS DB by Protein ID:ENSP00000369484
Original member Current member EBI ENST00000613078.4 ENSP00000483310.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613078.4Link to Ensembl Protein Viewer:ENSP00000483310.1Re-query CCDS DB by Nucleotide ID:ENST00000613078Re-query CCDS DB by Protein ID:ENSP00000483310
Original member Current member NCBI NM_001079691.2 NP_001073159.1 Accepted alive Link to Nucleotide Sequence:NM_001079691.2Link to Protein Sequence:NP_001073159.1Re-query CCDS DB by Nucleotide ID:NM_001079691Re-query CCDS DB by Protein ID:NP_001073159Link to BLAST:NP_001073159.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073159.1 173 Q5TBK1-2 173 100% 0 0

Chromosomal Locations for CCDS 41877.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32403144 32403200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32404203 32404271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32407250 32407338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32407645 32407772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32427904 32428082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGAGGACAGTTTCCTTCAATCTTTTGGGAGGCTGAGCCTCCAGCCCCAGCAGCAGCAGCAGCGGCAGC
GGCCGCCCCGGCCGCCCCCGCGGGGGACACCTCCTCGCCGCCACAGCTTTAGGAAACACCTCTACCTCCT
GCGAGGCCTCCCGGGCTCCGGGAAAACTACACTGGCCAGACAATTGCAGCATGACTTTCCCAGGGCCCTG
ATTTTCAGCACGGATGATTTTTTCTTCAGGGAAGATGGTGCCTATGAGTTCAATCCTGACTTCCTGGAGG
AAGCTCATGAATGGAACCAAAAAAGAGCAAGAAAAGCAATGAGGAATGGCATATCCCCCATTATTATTGA
TAATACCAACCTCCACGCCTGGGAAATGAAGCCCTATGCAGTCATGGTATTTCAGACCGAACAAAAGAAT
CTTTTCAGGCTGGAAATGGACATGGTAGTTTTCAGGCCAGAAATGAAGAAACATTCATGGTGTCTCAAGA
GAAAAAATCCACCGAATGAAAGAACGGTATGA

Translation (173 aa):
MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLARQLQHDFPRAL
IFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTNLHAWEMKPYAVMVFQTEQKN
LFRLEMDMVVFRPEMKKHSWCLKRKNPPNERTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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