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Report for CCDS3105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3105.1 Public Homo sapiens 3 FOXL2 24 110 108 CCDS HistoryNCBI Gene:668Re-query CCDS DB by CCDS ID:3105.1Re-query CCDS DB by GeneID:668See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3105.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000648323.1 ENSP00000497217.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000648323.1Link to Ensembl Protein Viewer:ENSP00000497217.1Re-query CCDS DB by Nucleotide ID:ENST00000648323Re-query CCDS DB by Protein ID:ENSP00000497217
Original member Current member NCBI NM_023067.4 NP_075555.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_023067.4Link to Protein Sequence:NP_075555.1Re-query CCDS DB by Nucleotide ID:NM_023067Re-query CCDS DB by Protein ID:NP_075555Link to BLAST:NP_075555.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075555.1 376 P58012 376 100% 0 0

Chromosomal Locations for CCDS 3105.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138945592 138946722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGATGGCCAGCTACCCCGAGCCCGAGGACGCGGCGGGGGCCCTGCTGGCCCCAGAGACCGGTCGCACAG
TC
AAGGAGCCAGAAGGGCCGCCGCCGAGCCCAGGCAAGGGCGGTGGGGGTGGCGGCGGGACAGCCCCGGA
G
AAGCCGGACCCGGCGCAGAAGCCCCCGTACTCGTACGTGGCGCTCATCGCCATGGCGATCCGCGAGAGC
GCG
GAGAAGAGGCTCACGCTGTCCGGCATCTACCAGTACATCATCGCGAAGTTCCCGTTCTACGAGAAGA
AT
AAGAAGGGCTGGCAAAATAGCATCCGCCACAACCTCAGCCTCAACGAGTGCTTCATCAAGGTGCCGCG
C
GAGGGCGGCGGCGAGCGCAAGGGCAACTACTGGACGCTGGACCCGGCCTGCGAAGACATGTTCGAGAAG
GGC
AACTACCGGCGCCGCCGCCGCATGAAGAGGCCCTTCCGGCCGCCGCCCGCGCACTTCCAGCCCGGCA
AG
GGGCTCTTCGGGGCCGGAGGCGCCGCAGGCGGGTGCGGCGTGGCGGGCGCCGGGGCCGACGGCTACGG
C
TACCTGGCGCCCCCCAAGTACCTGCAGTCTGGCTTCCTCAACAACTCGTGGCCGCTACCGCAGCCTCCC
TCA
CCCATGCCCTATGCCTCCTGCCAGATGGCGGCAGCCGCAGCGGCTGCAGCAGCTGCGGCTGCAGCCG
CG
GGCCCCGGTAGCCCTGGCGCGGCCGCTGTGGTCAAGGGGCTGGCGGGCCCGGCCGCCTCGTACGGGCC
G
TACACACGCGTGCAGAGCATGGCGCTGCCCCCCGGCGTAGTGAACTCGTACAATGGCCTGGGAGGCCCG
CCG
GCCGCACCCCCGCCTCCGCCGCACCCCCACCCGCATCCGCACGCACACCATCTGCACGCGGCCGCCG
CA
CCGCCGCCTGCCCCACCGCACCACGGGGCCGCCGCGCCGCCGCCGGGCCAGCTCAGCCCTGCCAGCCC
A
GCCACCGCCGCGCCCCCGGCGCCCGCGCCCACCAGTGCGCCGGGCCTGCAGTTCGCTTGTGCCCGGCAG
CCC
GAGCTCGCCATGATGCATTGCTCTTACTGGGACCACGACAGCAAGACCGGCGCGCTGCATTCGCGCC
TC
GATCTCTGA


Translation (376 aa):
MMASYPEPEDAAGALLAPETGRTVKEPEGPPPSPGKGGGGGGGTAPEKPDPAQKPPYSYVALIAMAIRES
A
EKRLTLSGIYQYIIAKFPFYEKNKKGWQNSIRHNLSLNECFIKVPREGGGERKGNYWTLDPACEDMFEK
G
NYRRRRRMKRPFRPPPAHFQPGKGLFGAGGAAGGCGVAGAGADGYGYLAPPKYLQSGFLNNSWPLPQPP
S
PMPYASCQMAAAAAAAAAAAAAAGPGSPGAAAVVKGLAGPAASYGPYTRVQSMALPPGVVNSYNGLGGP
P
AAPPPPPHPHPHPHAHHLHAAAAPPPAPPHHGAAAPPPGQLSPASPATAAPPAPAPTSAPGLQFACARQ
P
ELAMMHCSYWDHDSKTGALHSRLDL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser