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Report for CCDS2939.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2939.1 Public Homo sapiens 3 TFG 24 110 108 CCDS HistoryNCBI Gene:10342Re-query CCDS DB by CCDS ID:2939.1Re-query CCDS DB by GeneID:10342See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2939.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000240851.9 ENSP00000240851.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000240851.9Link to Ensembl Protein Viewer:ENSP00000240851.4Re-query CCDS DB by Nucleotide ID:ENST00000240851Re-query CCDS DB by Protein ID:ENSP00000240851
Original member Current member EBI ENST00000490574.6 ENSP00000419960.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000490574.6Link to Ensembl Protein Viewer:ENSP00000419960.1Re-query CCDS DB by Nucleotide ID:ENST00000490574Re-query CCDS DB by Protein ID:ENSP00000419960
Original member Current member EBI ENST00000487505.6 ENSP00000420797.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000487505.6Link to Ensembl Protein Viewer:ENSP00000420797.2Re-query CCDS DB by Nucleotide ID:ENST00000487505Re-query CCDS DB by Protein ID:ENSP00000420797
Original member Current member EBI ENST00000675553.1 ENSP00000501815.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675553.1Link to Ensembl Protein Viewer:ENSP00000501815.1Re-query CCDS DB by Nucleotide ID:ENST00000675553Re-query CCDS DB by Protein ID:ENSP00000501815
Original member Current member EBI ENST00000676395.1 ENSP00000502071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000676395.1Link to Ensembl Protein Viewer:ENSP00000502071.1Re-query CCDS DB by Nucleotide ID:ENST00000676395Re-query CCDS DB by Protein ID:ENSP00000502071
Original member Current member EBI ENST00000675499.1 ENSP00000502450.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675499.1Link to Ensembl Protein Viewer:ENSP00000502450.1Re-query CCDS DB by Nucleotide ID:ENST00000675499Re-query CCDS DB by Protein ID:ENSP00000502450
Original member Current member EBI ENST00000675243.1 ENSP00000502592.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675243.1Link to Ensembl Protein Viewer:ENSP00000502592.1Re-query CCDS DB by Nucleotide ID:ENST00000675243Re-query CCDS DB by Protein ID:ENSP00000502592
Original member Current member EBI ENST00000674615.1 ENSP00000502734.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000674615.1Link to Ensembl Protein Viewer:ENSP00000502734.1Re-query CCDS DB by Nucleotide ID:ENST00000674615Re-query CCDS DB by Protein ID:ENSP00000502734
Original member Current member NCBI NM_001007565.2 NP_001007566.1 Accepted alive Link to Nucleotide Sequence:NM_001007565.2Link to Protein Sequence:NP_001007566.1Re-query CCDS DB by Nucleotide ID:NM_001007565Re-query CCDS DB by Protein ID:NP_001007566Link to BLAST:NP_001007566.1
Original member Current member NCBI NM_001195478.2 NP_001182407.1 Accepted alive Link to Nucleotide Sequence:NM_001195478.2Link to Protein Sequence:NP_001182407.1Re-query CCDS DB by Nucleotide ID:NM_001195478Re-query CCDS DB by Protein ID:NP_001182407Link to BLAST:NP_001182407.1
Original member Current member NCBI NM_006070.6 NP_006061.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006070.6Link to Protein Sequence:NP_006061.2Re-query CCDS DB by Nucleotide ID:NM_006070Re-query CCDS DB by Protein ID:NP_006061Link to BLAST:NP_006061.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001007566.1 400 Q92734-1 400 100% 0 0
NP_001182407.1 400 Q92734-1 400 100% 0 0
NP_006061.2 400 Q92734-1 400 100% 0 0

Chromosomal Locations for CCDS 2939.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 100713686 100713869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100719975 100720058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100728712 100728858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100732508 100732672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100736576 100736716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100744833 100744931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 100748149 100748531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAACGGACAGTTGGATCTAAGTGGGAAGCTAATCATCAAAGCTCAACTTGGGGAGGATATTCGGCGAA
TTCCTATTCATAATGAAGATATTACTTATGATGAATTAGTGCTAATGATGCAACGAGTTTTCAGAGGAAA
ACTTCTGAGTAATGATGAAGTAACAATAAAGTATAAAGATGAAGATGGAGATCTTATAACAATTTTTGAT
AGTTCTGACCTTTCCTTTGCAATTCAGTGCAGTAGGATACTGAAACTGACATTATTTGTTAATGGCCAGC
CAAGACCCCTTGAATCAAGTCAGGTGAAATATCTCCGTCGAGAACTGATAGAACTTCGAAATAAAGTGAA
TCGTTTATTGGATAGCTTGGAACCACCTGGAGAACCAGGACCTTCCACCAATATTCCTGAAAATGATACT
GTGGATGGTAGGGAAGAAAAGTCTGCTTCTGATTCTTCTGGAAAACAGTCTACTCAGGTTATGGCAGCAA
GTATGTCTGCTTTTGATCCTTTAAAAAACCAAGATGAAATCAATAAAAATGTTATGTCAGCGTTTGGCTT
AACAGATGATCAGGTTTCAGGGCCACCCAGTGCTCCTGCAGAAGATCGTTCAGGAACACCCGACAGCATT
GCTTCCTCCTCCTCAGCAGCTCACCCACCAGGCGTTCAGCCACAGCAGCCACCATATACAGGAGCTCAGA
CTCAAGCAGGTCAGATTGAAGGTCAGATGTACCAACAGTACCAGCAACAGGCCGGCTATGGTGCACAGCA
GCCGCAGGCTCCACCTCAGCAGCCTCAACAGTATGGTATTCAGTATTCAGCAAGCTATAGTCAGCAGACT
GGACCTCAACAACCTCAGCAGTTCCAGGGATATGGCCAGCAACCAACTTCCCAGGCACCAGCTCCTGCCT
TTTCTGGTCAGCCTCAACAACTGCCTGCTCAGCCGCCACAGCAGTACCAGGCGAGCAATTATCCTGCACA
AACTTACACTGCCCAAACTTCTCAGCCTACTAATTATACTGTGGCTCCTGCCTCTCAACCTGGAATGGCT
CCAAGCCAACCTGGGGCCTATCAACCAAGACCAGGTTTTACTTCACTTCCTGGAAGTACCATGACCCCTC
CTCCAAGTGGGCCTAATCCTTATGCGCGTAACCGTCCTCCCTTTGGTCAGGGCTATACCCAACCTGGACC
TGGTTATCGATAA

Translation (400 aa):
MNGQLDLSGKLIIKAQLGEDIRRIPIHNEDITYDELVLMMQRVFRGKLLSNDEVTIKYKDEDGDLITIFD
SSDLSFAIQCSRILKLTLFVNGQPRPLESSQVKYLRRELIELRNKVNRLLDSLEPPGEPGPSTNIPENDT
VDGREEKSASDSSGKQSTQVMAASMSAFDPLKNQDEINKNVMSAFGLTDDQVSGPPSAPAEDRSGTPDSI
ASSSSAAHPPGVQPQQPPYTGAQTQAGQIEGQMYQQYQQQAGYGAQQPQAPPQQPQQYGIQYSASYSQQT
GPQQPQQFQGYGQQPTSQAPAPAFSGQPQQLPAQPPQQYQASNYPAQTYTAQTSQPTNYTVAPASQPGMA
PSQPGAYQPRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYTQPGPGYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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