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Report for CCDS93544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93544.1 Public Homo sapiens 4 G3BP2 24 110 108 CCDS HistoryNCBI Gene:9908Re-query CCDS DB by CCDS ID:93544.1Re-query CCDS DB by GeneID:9908See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93544.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000678244.1 ENSP00000504764.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000678244.1Link to Ensembl Protein Viewer:ENSP00000504764.1Re-query CCDS DB by Nucleotide ID:ENST00000678244Re-query CCDS DB by Protein ID:ENSP00000504764
Original member Current member NCBI NM_001400022.1 NP_001386951.1 Accepted alive Link to Nucleotide Sequence:NM_001400022.1Link to Protein Sequence:NP_001386951.1Re-query CCDS DB by Nucleotide ID:NM_001400022Re-query CCDS DB by Protein ID:NP_001386951Link to BLAST:NP_001386951.1

Chromosomal Locations for CCDS 93544.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 75645430 75645702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75646338 75646456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75647029 75647157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75648639 75648741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75655066 75655246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75655768 75655870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75656924 75657014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 75657557 75657625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1068 nt):
ATGGGTTTGCTGTCTAACAGTGGACAACCAGAAAGAAAGTTTATGCAAACCTTTGTTCTGGCTCCTGAAG
GATCTGTTCCAAATAAATTTTATGTTCACAATGATATGTTTCGTTATGAAGATGAAGTGTTTGGTGATTC
TGAGCCTGAACTTGATGAAGAATCAGAAGATGAAGTAGAAGAGGAACAAGAAGAAAGACAACCATCTCCT
GAACCTGTGCAAGAAAATGCTAACAGTGGTTACTATGAAGCTCACCCTGTGACTAATGGCATAGAGGAGC
CTTTGGAAGAATCCTCTCATGAACCTGAACCTGAGCCAGAATCTGAAACAAAGACTGAAGAGCTGAAACC
ACAAGTGGAGGAGAAGAACTTAGAAGAACTAGAGGAGAAATCTACTACTCCTCCTCCGGCAGAACCTGTT
TCTCTGCCACAAGAACCACCAAAGCCAAGAGTCGAAGCTAAACCAGAAGTTCAATCTCAGCCACCTCGTG
TGCGTGAACAACGACCTAGAGAACGACCTGGTTTTCCTCCTAGAGGACCAAGACCAGGCAGAGGAGATAT
GGAACAGAATGACTCTGACAACCGTAGAATAATTCGCTATCCAGATAGTCATCAACTTTTTGTTGGTAAC
TTGCCACATGATATTGATGAAAATGAGCTAAAGGAATTCTTCATGAGTTTTGGAAACGTTGTGGAACTTC
GCATCAATACCAAGGGTGTTGGGGGAAAGCTTCCAAATTTTGGTTTTGTGGTTTTTGATGACTCTGAACC
AGTTCAGAGAATCTTAATTGCAAAACCGATTATGTTTCGAGGGGAAGTACGTTTAAATGTGGAAGAGAAA
AAAACAAGAGCTGCAAGAGAGCGAGAAACCAGAGGTGGTGGTGATGATCGCAGGGATATTAGGCGCAATG
ATCGAGGTCCCGGTGGTCCACGTGGAATTGTGGGTGGTGGAATGATGCGTGATCGTGATGGAAGAGGACC
TCCTCCAAGGGGTGGCATGGCACAGAAACTTGGCTCTGGAAGAGGAACCGGGCAAATGGAGGGCCGCTTC
ACAGGACAGCGTCGCTGA

Translation (355 aa):
MGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGDSEPELDEESEDEVEEEQEERQPSP
EPVQENANSGYYEAHPVTNGIEEPLEESSHEPEPEPESETKTEELKPQVEEKNLEELEEKSTTPPPAEPV
SLPQEPPKPRVEAKPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGN
LPHDIDENELKEFFMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEK
KTRAARERETRGGGDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMAQKLGSGRGTGQMEGRF
TGQRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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