NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2611.1 Public Homo sapiens 3 TSEN2 24 110 108 CCDS HistoryNCBI Gene:80746Re-query CCDS DB by CCDS ID:2611.1Re-query CCDS DB by GeneID:80746See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2611.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000284995.11 ENSP00000284995.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000284995.11Link to Ensembl Protein Viewer:ENSP00000284995.6Re-query CCDS DB by Nucleotide ID:ENST00000284995Re-query CCDS DB by Protein ID:ENSP00000284995
Original member Current member EBI ENST00000402228.7 ENSP00000385976.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000402228.7Link to Ensembl Protein Viewer:ENSP00000385976.3Re-query CCDS DB by Nucleotide ID:ENST00000402228Re-query CCDS DB by Protein ID:ENSP00000385976
Original member Current member EBI ENST00000681140.1 ENSP00000505099.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681140.1Link to Ensembl Protein Viewer:ENSP00000505099.1Re-query CCDS DB by Nucleotide ID:ENST00000681140Re-query CCDS DB by Protein ID:ENSP00000505099
Original member Current member EBI ENST00000679699.1 ENSP00000505274.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679699.1Link to Ensembl Protein Viewer:ENSP00000505274.1Re-query CCDS DB by Nucleotide ID:ENST00000679699Re-query CCDS DB by Protein ID:ENSP00000505274
Original member Current member EBI ENST00000681482.1 ENSP00000505436.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681482.1Link to Ensembl Protein Viewer:ENSP00000505436.1Re-query CCDS DB by Nucleotide ID:ENST00000681482Re-query CCDS DB by Protein ID:ENSP00000505436
Original member Current member EBI ENST00000680986.1 ENSP00000505799.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680986.1Link to Ensembl Protein Viewer:ENSP00000505799.1Re-query CCDS DB by Nucleotide ID:ENST00000680986Re-query CCDS DB by Protein ID:ENSP00000505799
Original member Current member EBI ENST00000679425.1 ENSP00000505890.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679425.1Link to Ensembl Protein Viewer:ENSP00000505890.1Re-query CCDS DB by Nucleotide ID:ENST00000679425Re-query CCDS DB by Protein ID:ENSP00000505890
Original member Current member NCBI NM_001145392.2 NP_001138864.1 Accepted alive Link to Nucleotide Sequence:NM_001145392.2Link to Protein Sequence:NP_001138864.1Re-query CCDS DB by Nucleotide ID:NM_001145392Re-query CCDS DB by Protein ID:NP_001138864Link to BLAST:NP_001138864.1
Original member Current member NCBI NM_001321277.2 NP_001308206.1 Accepted alive Link to Nucleotide Sequence:NM_001321277.2Link to Protein Sequence:NP_001308206.1Re-query CCDS DB by Nucleotide ID:NM_001321277Re-query CCDS DB by Protein ID:NP_001308206Link to BLAST:NP_001308206.1
Original member Current member NCBI NM_025265.4 NP_079541.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025265.4Link to Protein Sequence:NP_079541.1Re-query CCDS DB by Nucleotide ID:NM_025265Re-query CCDS DB by Protein ID:NP_079541Link to BLAST:NP_079541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138864.1 465 Q8NCE0-1 465 100% 0 0
NP_001308206.1 465 Q8NCE0-1 465 100% 0 0
NP_079541.1 465 Q8NCE0-1 465 100% 0 0

Chromosomal Locations for CCDS 2611.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12489801 12489989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12492136 12492217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12496518 12496554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12503262 12503784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12505154 12505231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12516611 12516661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12519059 12519197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12528888 12528924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12529762 12529873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12531570 12531659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12532662 12532721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGGCAGAAGCAGTTTTCCATGCCCCAAAGAGGAAAAGAAGAGTGTATGAGACTTACGAGTCTCCATTGC
CAATCCCTTTTGGTCAGGACCATGGTCCTCTGAAAGAATTCAAGATATTCCGTGCTGAAATGATTAACAA
CAATGTGATTGTGAGGAATGCGGAGGACATTGAGCAGCTCTATGGGAAAGGTTATTTTGGAAAAGGTATT
CTTTCAAGAAGCCGTCCAAGCTTCACAATTTCAGATCCTAAACTGGTTGCTAAATGGAAAGATATGAAGA
CAAACATGCCTATCATCACATCAAAGAGGTATCAGCATAGTGTTGAGTGGGCAGCAGAGCTGATGCGTAG
ACAGGGGCAGGATGAGAGTACAGTGCGCAGAATCCTCAAGGATTACACGAAACCGCTTGAGCATCCTCCT
GTGAAAAGGAATGAAGAGGCTCAAGTGCATGACAAGCTTAACTCTGGAATGGTTTCCAACATGGAAGGCA
CAGCAGGGGGAGAGAGACCTTCTGTGGTAAACGGGGACTCTGGAAAGTCAGGTGGTGTGGGTGATCCCCG
TGAGCCATTAGGCTGCCTGCAGGAGGGCTCTGGCTGCCACCCAACAACAGAGAGCTTTGAGAAAAGCGTG
CGAGAGGATGCCTCACCTCTGCCCCATGTCTGTTGCTGCAAACAAGATGCTCTCATCCTCCAGCGTGGCC
TTCATCATGAAGACGGCAGCCAGCACATCGGCCTCCTGCATCCTGGGGACAGAGGGCCTGACCATGAGTA
CGTGCTGGTCGAGGAAGCGGAGTGTGCCATGAGCGAGAGGGAGGCTGCCCCAAATGAGGAATTGGTGCAA
AGAAACAGGTTAATATGCAGAAGAAATCCATATAGGATCTTTGAGTATTTGCAACTCAGCCTAGAAGAGG
CCTTTTTCTTGGTCTATGCTCTGGGATGTTTAAGTATTTACTATGAGAAGGAGCCTTTAACGATAGTGAA
GCTCTGGAAAGCTTTCACTGTAGTTCAGCCCACGTTCAGAACCACCTACATGGCCTACCATTACTTTCGA
AGCAAGGGCTGGGTGCCCAAAGTGGGACTCAAGTACGGGACAGATTTACTGCTATATCGGAAAGGCCCTC
CATTTTACCATGCAAGTTATTCTGTCATTATCGAGCTAGTTGATGACCATTTTGAAGGCTCTCTCCGCAG
GCCTCTCAGTTGGAAGTCCCTGGCTGCCTTGAGCAGAGTTTCCGTTAATGTCTCTAAGGAACTTATGCTG
TGCTATTTGATTAAACCCTCTACTATGACTGACAAGGAAATGGAGTCACCAGAATGTATGAAAAGGATTA
AAGTTCAGGAGGTGATTCTGAGTCGATGGGTTTCTTCACGAGAGAGGAGTGACCAAGACGATCTTTAA

Translation (465 aa):
MAEAVFHAPKRKRRVYETYESPLPIPFGQDHGPLKEFKIFRAEMINNNVIVRNAEDIEQLYGKGYFGKGI
LSRSRPSFTISDPKLVAKWKDMKTNMPIITSKRYQHSVEWAAELMRRQGQDESTVRRILKDYTKPLEHPP
VKRNEEAQVHDKLNSGMVSNMEGTAGGERPSVVNGDSGKSGGVGDPREPLGCLQEGSGCHPTTESFEKSV
REDASPLPHVCCCKQDALILQRGLHHEDGSQHIGLLHPGDRGPDHEYVLVEEAECAMSEREAAPNEELVQ
RNRLICRRNPYRIFEYLQLSLEEAFFLVYALGCLSIYYEKEPLTIVKLWKAFTVVQPTFRTTYMAYHYFR
SKGWVPKVGLKYGTDLLLYRKGPPFYHASYSVIIELVDDHFEGSLRRPLSWKSLAALSRVSVNVSKELML
CYLIKPSTMTDKEMESPECMKRIKVQEVILSRWVSSRERSDQDDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH