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Report for CCDS34990.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34990.1 Public Homo sapiens 9 TYRP1 24 110 108 CCDS HistoryNCBI Gene:7306Re-query CCDS DB by CCDS ID:34990.1Re-query CCDS DB by GeneID:7306See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34990.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000388918.10 ENSP00000373570.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000388918.10Link to Ensembl Protein Viewer:ENSP00000373570.4Re-query CCDS DB by Nucleotide ID:ENST00000388918Re-query CCDS DB by Protein ID:ENSP00000373570
Original member Current member NCBI NM_000550.3 NP_000541.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000550.3Link to Protein Sequence:NP_000541.1Re-query CCDS DB by Nucleotide ID:NM_000550Re-query CCDS DB by Protein ID:NP_000541Link to BLAST:NP_000541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000541.1 537 P17643 537 100% 0 0

Chromosomal Locations for CCDS 34990.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 12693997 12694381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12695515 12695837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12698451 12698655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12702271 12702438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12704526 12704705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12707997 12708143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 12708977 12709182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1614 nt):
ATGAGTGCTCCTAAACTCCTCTCTCTGGGCTGTATCTTCTTCCCCTTGCTACTTTTTCAGCAGGCCCGGG
CTCAATTCCCAAGACAGTGTGCCACTGTTGAGGCTTTGAGAAGTGGTATGTGTTGCCCAGACCTGTCCCC
TGTGTCTGGGCCTGGGACAGACCGCTGTGGCTCATCATCAGGGAGGGGCAGATGTGAGGCAGTGACTGCA
GACTCCCGGCCCCACAGCCCTCAGTATCCCCATGATGGCAGAGATGATCGGGAGGTCTGGCCCTTGCGCT
TCTTCAATAGGACATGTCACTGCAACGGCAATTTCTCAGGACACAACTGTGGGACGTGCCGTCCTGGCTG
GAGAGGAGCTGCCTGTGACCAGAGGGTTCTCATAGTCAGGAGAAATCTTCTGGACTTAAGTAAAGAAGAA
AAGAACCACTTTGTCCGGGCCCTGGATATGGCAAAGCGCACAACTCACCCTTTATTTGTCATTGCCACCA
GGAGATCAGAAGAAATACTGGGGCCAGATGGCAACACGCCACAATTTGAGAACATTTCCATTTATAACTA
CTTTGTTTGGACACACTATTACTCAGTCAAAAAGACTTTCCTTGGGGTAGGACAGGAAAGCTTTGGTGAA
GTGGATTTCTCTCATGAGGGACCAGCTTTTCTCACATGGCACAGGTACCACCTCCTGCGTCTGGAGAAAG
ACATGCAGGAAATGTTGCAAGAGCCTTCTTTCTCCCTTCCTTACTGGAATTTTGCAACGGGGAAAAATGT
CTGTGATATCTGCACGGATGACTTGATGGGATCCAGAAGCAACTTTGATTCCACTCTAATAAGCCCAAAC
TCTGTCTTTTCTCAATGGCGAGTGGTCTGTGACTCCTTGGAAGATTATGATACCCTGGGAACACTTTGTA
ACAGCACCGAGGATGGGCCAATTAGGAGAAATCCAGCTGGAAATGTGGCCAGACCAATGGTGCAACGTCT
TCCTGAACCACAGGATGTCGCTCAGTGCTTGGAAGTTGGTTTATTTGACACGCCTCCTTTTTATTCCAAC
TCTACAAACAGTTTCCGAAACACAGTGGAAGGTTACAGTGACCCCACGGGAAAGTATGACCCTGCTGTTC
GAAGTCTTCACAATTTGGCTCATCTATTCCTGAATGGAACAGGGGGACAAACCCATTTGTCTCCAAATGA
TCCTATTTTTGTCCTCCTGCACACCTTCACAGATGCAGTCTTTGATGAATGGCTGAGGAGATACAATGCT
GATATATCCACATTTCCATTGGAAAATGCCCCTATTGGACATAATAGACAATACAACATGGTGCCATTCT
GGCCCCCAGTCACCAACACAGAAATGTTTGTTACTGCTCCAGACAACCTGGGATACACTTATGAAATTCA
ATGGCCAAGTCGGGAGTTTAGTGTACCTGAGATAATTGCCATAGCAGTAGTTGGCGCTTTGTTACTGGTT
GCACTCATTTTTGGGACTGCTTCTTATCTGATTCGTGCCAGACGCAGTATGGATGAAGCTAACCAGCCTC
TCCTCACTGATCAGTATCAATGCTATGCTGAAGAATATGAAAAACTCCAGAATCCTAATCAGTCTGTGGT
CTAA

Translation (537 aa):
MSAPKLLSLGCIFFPLLLFQQARAQFPRQCATVEALRSGMCCPDLSPVSGPGTDRCGSSSGRGRCEAVTA
DSRPHSPQYPHDGRDDREVWPLRFFNRTCHCNGNFSGHNCGTCRPGWRGAACDQRVLIVRRNLLDLSKEE
KNHFVRALDMAKRTTHPLFVIATRRSEEILGPDGNTPQFENISIYNYFVWTHYYSVKKTFLGVGQESFGE
VDFSHEGPAFLTWHRYHLLRLEKDMQEMLQEPSFSLPYWNFATGKNVCDICTDDLMGSRSNFDSTLISPN
SVFSQWRVVCDSLEDYDTLGTLCNSTEDGPIRRNPAGNVARPMVQRLPEPQDVAQCLEVGLFDTPPFYSN
STNSFRNTVEGYSDPTGKYDPAVRSLHNLAHLFLNGTGGQTHLSPNDPIFVLLHTFTDAVFDEWLRRYNA
DISTFPLENAPIGHNRQYNMVPFWPPVTNTEMFVTAPDNLGYTYEIQWPSREFSVPEIIAIAVVGALLLV
ALIFGTASYLIRARRSMDEANQPLLTDQYQCYAEEYEKLQNPNQSVV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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