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Report for CCDS31980.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31980.1 Public Homo sapiens 13 HNRNPA1L2 24 110 108 CCDS HistoryNCBI Gene:144983Re-query CCDS DB by CCDS ID:31980.1Re-query CCDS DB by GeneID:144983See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31980.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357495.5 ENSP00000350090.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357495.5Link to Ensembl Protein Viewer:ENSP00000350090.2Re-query CCDS DB by Nucleotide ID:ENST00000357495Re-query CCDS DB by Protein ID:ENSP00000350090
Original member Current member NCBI NM_001011724.3 NP_001011724.1 Accepted alive Link to Nucleotide Sequence:NM_001011724.3Link to Protein Sequence:NP_001011724.1Re-query CCDS DB by Nucleotide ID:NM_001011724Re-query CCDS DB by Protein ID:NP_001011724Link to BLAST:NP_001011724.1
Original member Current member NCBI NM_001011725.3 NP_001011725.1 Accepted alive Link to Nucleotide Sequence:NM_001011725.3Link to Protein Sequence:NP_001011725.1Re-query CCDS DB by Nucleotide ID:NM_001011725Re-query CCDS DB by Protein ID:NP_001011725Link to BLAST:NP_001011725.1
Original member Current member NCBI NM_001389320.1 NP_001376249.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001389320.1Link to Protein Sequence:NP_001376249.1Re-query CCDS DB by Nucleotide ID:NM_001389320Re-query CCDS DB by Protein ID:NP_001376249Link to BLAST:NP_001376249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001011724.1 320 Q32P51 320 100% 0 0
NP_001011725.1 320 Q32P51 320 100% 0 0
NP_001376249.1 320 Q32P51 320 100% 0 0

Chromosomal Locations for CCDS 31980.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52642493 52643455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGTCTAAGTCAGCGTCTCCAAAAGAGCCCGAACAGCTGAGGAAGCTCTTCATTGGAGGGTTGAGCTTTG
AAACAACTGATGAGAGCCTGAGGAGCCATTTTGAGCAATGGGGAACGCTCACAGACTGTGTGGTAATGAG
AGATCCAAACACCAAGCGCTCCAGGGGCTTTGGGTTTGTCACATATGCCACTGTGGAGGAGGTGGATGCA
GCTATGAATACAACGCCACACAAGGTGGATGGAAGAGTTGTGGAACCAAAGAGAGCTGTCTCCAGAGAAG
ATTCTCAAAGACCAGGTGCCCACTTAACTGTGAAAAAGATATTTGTTGGTGGCATTAAAGAAGACACTGA
AGAACATCACCTAAGAGATTATTTTGAACAGTATGGAAAAATTGAAGTAATTGAAATCATGACTGACCGA
GGCAGTGGCAAGAAAAGGGGCTTTGCCTTTGTAACCTTTGACGACCATGACTCCGTGGATAAGATTGTCA
TTCAGAAATACCATACTGTGAAGGGCCACAACTGTGAAGTTAGAAAAGCCCTGCCAAAGCAAGAGATGGC
TAGTGCTTCATCCAGCCAAAGAGGTCGAAGGGGTTCTGGAAACTTTGGTGGTGGTCGTGGAGATGGTTTC
GGTGGGAATGACAACTTTGGTCGTGGAGGAAACTTCAGTGGTCGTGGTGGCTTTGGTGGCAGCTGTGGTG
GTGGTGGATATGGTGGCAGTGGGGATGGCTATAATGGATTTGGTAATGATGGAAGCAATTTTGGAGGTGG
TGGAAGCTACAATGATTTTGGCAATTACAACAATCAGTCTTCAAATTTTGGACCCATGAAGGGAGGAAAT
TTTGGAGGCAGAAGCTCTGGCCCCTATGGCGGTGGAGGCCAATACTTTGCAAAACCACAAAACCAAGGTG
GCTATGGCGTTTCCAGCAGCAGCAGTAGCTATGGCAGTGGCAGAAGATTTTAA

Translation (320 aa):
MSKSASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDA
AMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR
GSGKKRGFAFVTFDDHDSVDKIVIQKYHTVKGHNCEVRKALPKQEMASASSSQRGRRGSGNFGGGRGDGF
GGNDNFGRGGNFSGRGGFGGSCGGGGYGGSGDGYNGFGNDGSNFGGGGSYNDFGNYNNQSSNFGPMKGGN
FGGRSSGPYGGGGQYFAKPQNQGGYGVSSSSSSYGSGRRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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