NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43959.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43959.1 Public Homo sapiens X TRO 24 110 108 CCDS HistoryNCBI Gene:7216Re-query CCDS DB by CCDS ID:43959.1Re-query CCDS DB by GeneID:7216See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43959.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000173898.12 ENSP00000173898.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000173898.12Link to Ensembl Protein Viewer:ENSP00000173898.7Re-query CCDS DB by Nucleotide ID:ENST00000173898Re-query CCDS DB by Protein ID:ENSP00000173898
Original member Current member NCBI NM_001039705.3 NP_001034794.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001039705.3Link to Protein Sequence:NP_001034794.1Re-query CCDS DB by Nucleotide ID:NM_001039705Re-query CCDS DB by Protein ID:NP_001034794Link to BLAST:NP_001034794.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034794.1 1431 Q12816-1 1431 100% 0 0

Chromosomal Locations for CCDS 43959.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 54922247 54922291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54922578 54923768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924451 54924555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924670 54924733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54924989 54925068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54925592 54925683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54926410 54926489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54926583 54926625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54927043 54927105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54927667 54927781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 54928603 54931020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4296 nt):
ATGGATAGGAGAAATGACTACGGATATAGGGTGCCTCTATTTCAGGGCCCTCTGCCTCCCCCGGGGAGCC
TGGGGCTTCCCTTCCCTCCAGATATACAGACTGAGACCACAGAAGAGGACAGTGTCCTGCTGATGCATAC
CCTGTTGGCGGCAACCAAGGACTCCCTGGCCATGGACCCACCAGTTGTCAACCGGCCTAAGAAAAGCAAG
ACCAAGAAGGCCCCTATAAAGACTATTACTAAGGCTGCACCTGCTGCCCCTCCAGTCCCAGCTGCCAATG
AGATTGCCACCAACAAGCCCAAAATAACTTGGCAGGCTTTAAACCTGCCAGTCATTACCCAGATCAGCCA
GGCTTTACCTACCACTGAGGTAACCAATACTCAGGCTTCTTCAGTCACTGCTCAGCCTAAGAAAGCCAAC
AAGATGAAGAGAGTTACTGCCAAGGCAGCCCAAGGCTCCCAATCCCCAACTGGCCATGAGGGTGGCACTA
TACAGCTGAAGTCACCCTTGCAGGTCCTAAAGCTACCAGTCATCTCACAGAATATTCACGCTCCAATTGC
CAATGAGTCAGCCAGTTCCCAAGCCTTGATAACCTCTATCAAGCCTAAGAAAGCTTCCAAGGCTAAGAAG
GCTGCAAATAAGGCCATAGCTAGTGCCACCGAGGTCTCGCTGGCTGCAACTGCCACCCATACAGCTACCA
CCCAAGGCCAAATTACCAATGAGACAGCCAGTATCCACACCACAGCAGCCTCCATCCGAACCAAGAAAGC
CTCCAAAGCCAGGAAGACAATTGCTAAGGTCATAAATACTGACACTGAGCATATAGAGGCTCTAAATGTC
ACTGACGCAGCTACCAGGCAGATTGAGGCCTCAGTAGTGGCTATCAGGCCCAAAAAATCCAAGGGCAAGA
AGGCTGCCAGCAGGGGCCCAAATTCTGTCTCTGAGATCTCTGAGGCCCCACTTGCCACTCAGATAGTCAC
AAACCAAGCCCTGGCAGCCACCCTGCGGGTCAAGAGAGGGTCTAGGGCTCGGAAGGCTGCCACTAAGGCT
CGGGCAACTGAAAGCCAGACTCCAAATGCTGACCAAGGGGCCCAGGCCAAGATAGCCTCTGCTCAGACCA
ACGTAAGTGCCCTTGAGACTCAGGTTGCTGCTGCTGTCCAGGCCCTGGCAGATGACTATCTGGCTCAGTT
GAGCCTGGAGCCCACAACCAGGACCCGGGGCAAAAGAAACCGAAAGTCCAAGCATCTGAATGGGGATGAG
AGAAGTGGCAGTAATTACAGGCGGATCCCATGGGGCCGGAGGCCTGCACCACCGCGAGATGTGGCCATTT
TACAAGAAAGGGCTAATAAGTTGGTGAAATACCTGTTGGTTAAGGACCAGACAAAGATCCCCATCAAACG
CTCAGACATGCTGAGGGATGTCATCCAAGAATATGATGAATATTTCCCAGAAATCATTGAACGAGCAAGC
TACACTCTGGAGAAGATGTTTCGAGTCAATCTGAAAGAAATTGATAAGCAAAGTAGCTTGTATATTCTCA
TCAGCACTCAGGAATCCTCTGCAGGCATACTGGGAACGACCAAGGACACACCCAAGCTGGGTCTCCTCAT
GGTGATTCTGAGTGTCATTTTTATGAATGGCAACAAGGCCAGTGAGGCTGTCATCTGGGAGGTGCTGCGC
AAGTTGGGGCTGCGCCCTGGGGTGAGGCATTCACTCTTTGGGGAAGTGAGGAAGCTCATCACAGACGAGT
TTGTGAAGCAGAAGTACCTGGAGTACAAGAGGGTCCCTAACAGCAGACCACCTGAATATGAGTTCTTCTG
GGGCTTGCGCTCCTACCACGAGACTAGCAAGATGAAAGTCCTCAAGTTTGCATGCAGGGTGCAGAAGAAA
GACCCCAAGGACTGGGCTGTGCAGTACCGCGAGGCAGTGGAGATGGAAGTCCAAGCTGCAGCTGTGGCTG
TGGCTGAGGCTGAAGCCAGGGCTGAGGCAAGAGCCCAAATGGGGATTGGAGAGGAAGCTGTGGCTGGGCC
CTGGAATTGGGATGACATGGATATCGACTGCCTAACAAGGGAAGAGTTAGGCGATGATGCTCAGGCCTGG
AGCAGATTTTCATTTGAAATTGAGGCCAGAGCCCAAGAAAATGCAGATGCCAGCACCAACGTCAACTTCA
GCAGAGGAGCTAGTACCAGGGCTGGCTTCAGCGATGGTGCTAGTATTAGCTTCAATGGTGCACCCAGCTC
CAGTGGTGGCTTCAGTGGTGGACCTGGCATTACCTTTGGTGTTGCACCCAGCACCAGTGCCAGCTTCAGC
AATACAGCCAGCATTAGCTTTGGTGGTACACTGAGCACTAGCTCCAGCTTCAGCAGCGCAGCCAGCATTA
GCTTTGGTTGTGCACACAGCACCAGCACTAGTTTCAGCAGTGAAGCCAGCATTAGCTTTGGTGGCATGCC
TTGTACCAGTGCCAGCTTTAGTGGTGGAGTCAGCTCTAGTTTTAGTGGCCCACTCAGCACCAGTGCCACT
TTCAGTGGTGGAGCCAGCTCTGGCTTTGGAGGCACACTCAGCACCACGGCTGGCTTTAGTGGTGTACTCA
GCACTAGCACCAGCTTTGGCAGTGCACCCACAACGAGCACAGTCTTCAGTAGTGCGCTTAGCACCAGCAC
TGGCTTTGGAGGCATACTCAGCACCAGTGTCTGTTTTGGTGGCTCTCCCAGCTCCAGTGGTAGCTTTGGT
GGTACACTCAGTACCAGTATCTGCTTCGGTGGCTCTCCCTGCACCAGCACTGGCTTTGGAGGCACACTTA
GCACCAGTGTCTCCTTTGGTGGCTCTTCCAGCACCAGTGCCAATTTTGGTGGTACACTAAGTACCAGCAT
CTGCTTTGATGGCTCTCCCAGCACTGGTGCTGGCTTTGGTGGTGCTCTCAACACCAGTGCCAGCTTTGGC
AGTGTGCTCAACACCAGTACTGGTTTTGGTGGTGCTATGAGCACCAGTGCTGACTTTGGCGGTACACTAA
GCACCAGTGTCTGCTTTGGTGGCTCTCCTGGCACCAGTGTCAGCTTTGGCAGTGCACTCAACACCAATGC
TGGTTATGGTGGTGCTGTCAGCACCAACACTGACTTTGGTGGTACACTAAGCACCAGCGTCTGTTTTGGT
GGCTCTCCCAGCACCAGTGCTGGCTTTGGTGGTGCACTCAACACCAATGCCAGCTTTGGCTGTGCCGTCA
GCACCAGTGCCAGCTTCAGTGGTGCTGTCAGCACCAGTGCTTGCTTCAGTGGTGCACCAATCACCAACCC
TGGCTTTGGCGGTGCATTTAGCACCAGTGCTGGCTTCGGTGGGGCACTTAGTACCGCTGCTGACTTCGGT
GGTACTCCCAGCAACAGCATTGGCTTTGGTGCTGCTCCCAGCACCAGTGTCAGCTTTGGTGGTGCTCATG
GCACCAGCCTCTGTTTTGGTGGAGCTCCCAGCACCAGCCTCTGCTTTGGCAGTGCATCTAATACTAACCT
ATGCTTTGGTGGCCCTCCTAGCACCAGTGCCTGCTTTAGTGGTGCTACCAGCCCTAGTTTTTGTGATGGA
CCCAGCACCAGTACCGGTTTCAGCTTTGGCAATGGGTTAAGCACCAATGCTGGATTTGGTGGTGGACTGA
ACACCAGTGCTGGCTTTGGTGGTGGCCTAGGCACCAGTGCTGGCTTCAGTGGTGGCCTAAGCACAAGTTC
TGGCTTTGATGGTGGGCTAGGTACCAGCGCTGGCTTCGGTGGAGGACCAGGCACCAGCACTGGTTTTGGT
GGTGGACTGGGCACCAGTGCTGGCTTCAGTGGCGGACTGGGCACCAGTGCTGGCTTTGGTGGTGGACTGG
TCACTAGTGATGGCTTTGGTGGTGGACTGGGCACCAATGCTAGTTTCGGCAGCACACTTGGCACCAGTGC
TGGCTTTAGTGGTGGCCTCAGCACCAGCGATGGCTTTGGCAGTAGGCCTAATGCCAGCTTCGACAGAGGA
CTGAGTACCATCATTGGCTTTGGCAGTGGTTCCAACACCAGCACTGGCTTTACTGGCGAACCCAGCACCA
GCACGGGCTTCAGTAGTGGACCCAGTTCTATTGTTGGCTTCAGCGGTGGACCAAGCACTGGTGTTGGCTT
CTGCAGTGGACCAAGCACCAGTGGCTTCAGCGGTGGACCGAGCACAGGAGCTGGCTTCGGCGGTGGACCA
AACACTGGTGCTGGCTTTGGTGGTGGACCGAGCACCAGTGCTGGCTTTGGCAGTGGAGCCGCCAGTCTTG
GTGCCTGTGGCTTCTCGTATGGCTAG

Translation (1431 aa):
MDRRNDYGYRVPLFQGPLPPPGSLGLPFPPDIQTETTEEDSVLLMHTLLAATKDSLAMDPPVVNRPKKSK
TKKAPIKTITKAAPAAPPVPAANEIATNKPKITWQALNLPVITQISQALPTTEVTNTQASSVTAQPKKAN
KMKRVTAKAAQGSQSPTGHEGGTIQLKSPLQVLKLPVISQNIHAPIANESASSQALITSIKPKKASKAKK
AANKAIASATEVSLAATATHTATTQGQITNETASIHTTAASIRTKKASKARKTIAKVINTDTEHIEALNV
TDAATRQIEASVVAIRPKKSKGKKAASRGPNSVSEISEAPLATQIVTNQALAATLRVKRGSRARKAATKA
RATESQTPNADQGAQAKIASAQTNVSALETQVAAAVQALADDYLAQLSLEPTTRTRGKRNRKSKHLNGDE
RSGSNYRRIPWGRRPAPPRDVAILQERANKLVKYLLVKDQTKIPIKRSDMLRDVIQEYDEYFPEIIERAS
YTLEKMFRVNLKEIDKQSSLYILISTQESSAGILGTTKDTPKLGLLMVILSVIFMNGNKASEAVIWEVLR
KLGLRPGVRHSLFGEVRKLITDEFVKQKYLEYKRVPNSRPPEYEFFWGLRSYHETSKMKVLKFACRVQKK
DPKDWAVQYREAVEMEVQAAAVAVAEAEARAEARAQMGIGEEAVAGPWNWDDMDIDCLTREELGDDAQAW
SRFSFEIEARAQENADASTNVNFSRGASTRAGFSDGASISFNGAPSSSGGFSGGPGITFGVAPSTSASFS
NTASISFGGTLSTSSSFSSAASISFGCAHSTSTSFSSEASISFGGMPCTSASFSGGVSSSFSGPLSTSAT
FSGGASSGFGGTLSTTAGFSGVLSTSTSFGSAPTTSTVFSSALSTSTGFGGILSTSVCFGGSPSSSGSFG
GTLSTSICFGGSPCTSTGFGGTLSTSVSFGGSSSTSANFGGTLSTSICFDGSPSTGAGFGGALNTSASFG
SVLNTSTGFGGAMSTSADFGGTLSTSVCFGGSPGTSVSFGSALNTNAGYGGAVSTNTDFGGTLSTSVCFG
GSPSTSAGFGGALNTNASFGCAVSTSASFSGAVSTSACFSGAPITNPGFGGAFSTSAGFGGALSTAADFG
GTPSNSIGFGAAPSTSVSFGGAHGTSLCFGGAPSTSLCFGSASNTNLCFGGPPSTSACFSGATSPSFCDG
PSTSTGFSFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTSTGFG
GGLGTSAGFSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRPNASFDRG
LSTIIGFGSGSNTSTGFTGEPSTSTGFSSGPSSIVGFSGGPSTGVGFCSGPSTSGFSGGPSTGAGFGGGP
NTGAGFGGGPSTSAGFGSGAASLGACGFSYG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH