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Report for CCDS5322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5322.1 Public Homo sapiens 7 GPER1 24 110 108 CCDS HistoryNCBI Gene:2852Re-query CCDS DB by CCDS ID:5322.1Re-query CCDS DB by GeneID:2852See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5322.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297469.3 ENSP00000297469.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297469.3Link to Ensembl Protein Viewer:ENSP00000297469.3Re-query CCDS DB by Nucleotide ID:ENST00000297469Re-query CCDS DB by Protein ID:ENSP00000297469
Original member Current member EBI ENST00000397088.4 ENSP00000380277.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397088.4Link to Ensembl Protein Viewer:ENSP00000380277.3Re-query CCDS DB by Nucleotide ID:ENST00000397088Re-query CCDS DB by Protein ID:ENSP00000380277
Original member Current member EBI ENST00000397092.5 ENSP00000380281.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397092.5Link to Ensembl Protein Viewer:ENSP00000380281.1Re-query CCDS DB by Nucleotide ID:ENST00000397092Re-query CCDS DB by Protein ID:ENSP00000380281
Original member Current member EBI ENST00000401670.1 ENSP00000385151.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000401670.1Link to Ensembl Protein Viewer:ENSP00000385151.1Re-query CCDS DB by Nucleotide ID:ENST00000401670Re-query CCDS DB by Protein ID:ENSP00000385151
Original member Current member NCBI NM_001039966.2 NP_001035055.1 Accepted alive Link to Nucleotide Sequence:NM_001039966.2Link to Protein Sequence:NP_001035055.1Re-query CCDS DB by Nucleotide ID:NM_001039966Re-query CCDS DB by Protein ID:NP_001035055Link to BLAST:NP_001035055.1
Original member Current member NCBI NM_001098201.3 NP_001091671.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098201.3Link to Protein Sequence:NP_001091671.1Re-query CCDS DB by Nucleotide ID:NM_001098201Re-query CCDS DB by Protein ID:NP_001091671Link to BLAST:NP_001091671.1
Original member Current member NCBI NM_001505.3 NP_001496.1 Accepted alive Link to Nucleotide Sequence:NM_001505.3Link to Protein Sequence:NP_001496.1Re-query CCDS DB by Nucleotide ID:NM_001505Re-query CCDS DB by Protein ID:NP_001496Link to BLAST:NP_001496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035055.1 375 Q99527 375 100% 0 0
NP_001091671.1 375 Q99527 375 100% 0 0
NP_001496.1 375 Q99527 375 100% 0 0

Chromosomal Locations for CCDS 5322.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 1091729 1092856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGGATGTGACTTCCCAAGCCCGGGGCGTGGGCCTGGAGATGTACCCAGGCACCGCGCAGCCTGCGGCCC
CCAACACCACCTCCCCCGAGCTCAACCTGTCCCACCCGCTCCTGGGCACCGCCCTGGCCAATGGGACAGG
TGAGCTCTCGGAGCACCAGCAGTACGTGATCGGCCTGTTCCTCTCGTGCCTCTACACCATCTTCCTCTTC
CCCATCGGCTTTGTGGGCAACATCCTGATCCTGGTGGTGAACATCAGCTTCCGCGAGAAGATGACCATCC
CCGACCTGTACTTCATCAACCTGGCGGTGGCGGACCTCATCCTGGTGGCCGACTCCCTCATTGAGGTGTT
CAACCTGCACGAGCGGTACTACGACATCGCCGTCCTGTGCACCTTCATGTCGCTCTTCCTGCAGGTCAAC
ATGTACAGCAGCGTCTTCTTCCTCACCTGGATGAGCTTCGACCGCTACATCGCCCTGGCCAGGGCCATGC
GCTGCAGCCTGTTCCGCACCAAGCACCACGCCCGGCTGAGCTGTGGCCTCATCTGGATGGCATCCGTGTC
AGCCACGCTGGTGCCCTTCACCGCCGTGCACCTGCAGCACACCGACGAGGCCTGCTTCTGTTTCGCGGAT
GTCCGGGAGGTGCAGTGGCTCGAGGTCACGCTGGGCTTCATCGTGCCCTTCGCCATCATCGGCCTGTGCT
ACTCCCTCATTGTCCGGGTGCTGGTCAGGGCGCACCGGCACCGTGGGCTGCGGCCCCGGCGGCAGAAGGC
GCTCCGCATGATCCTCGCGGTGGTGCTGGTCTTCTTCGTCTGCTGGCTGCCGGAGAACGTCTTCATCAGC
GTGCACCTCCTGCAGCGGACGCAGCCTGGGGCCGCTCCCTGCAAGCAGTCTTTCCGCCATGCCCACCCCC
TCACGGGCCACATTGTCAACCTCGCCGCCTTCTCCAACAGCTGCCTAAACCCCCTCATCTACAGCTTTCT
CGGGGAGACCTTCAGGGACAAGCTGAGGCTGTACATTGAGCAGAAAACAAATTTGCCGGCCCTGAACCGC
TTCTGTCACGCTGCCCTGAAGGCCGTCATTCCAGACAGCACCGAGCAGTCGGATGTGAGGTTCAGCAGTG
CCGTGTAG

Translation (375 aa):
MDVTSQARGVGLEMYPGTAQPAAPNTTSPELNLSHPLLGTALANGTGELSEHQQYVIGLFLSCLYTIFLF
PIGFVGNILILVVNISFREKMTIPDLYFINLAVADLILVADSLIEVFNLHERYYDIAVLCTFMSLFLQVN
MYSSVFFLTWMSFDRYIALARAMRCSLFRTKHHARLSCGLIWMASVSATLVPFTAVHLQHTDEACFCFAD
VREVQWLEVTLGFIVPFAIIGLCYSLIVRVLVRAHRHRGLRPRRQKALRMILAVVLVFFVCWLPENVFIS
VHLLQRTQPGAAPCKQSFRHAHPLTGHIVNLAAFSNSCLNPLIYSFLGETFRDKLRLYIEQKTNLPALNR
FCHAALKAVIPDSTEQSDVRFSSAV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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