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Report for CCDS43691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43691.1 Public Homo sapiens 8 DEFA1B 24 110 108 CCDS HistoryNCBI Gene:728358Re-query CCDS DB by CCDS ID:43691.1Re-query CCDS DB by GeneID:728358See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43691.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382689.8 ENSP00000372136.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382689.8Link to Ensembl Protein Viewer:ENSP00000372136.3Re-query CCDS DB by Nucleotide ID:ENST00000382689Re-query CCDS DB by Protein ID:ENSP00000372136
Original member Current member NCBI NM_001042500.2 NP_001035965.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042500.2Link to Protein Sequence:NP_001035965.1Re-query CCDS DB by Nucleotide ID:NM_001042500Re-query CCDS DB by Protein ID:NP_001035965Link to BLAST:NP_001035965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035965.1 94 P59665 94 100% 0 0

Chromosomal Locations for CCDS 43691.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 6996887 6996996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 6997577 6997751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (285 nt):
ATGAGGACCCTCGCCATCCTTGCTGCCATTCTCCTGGTGGCCCTGCAGGCCCAGGCTGAGCCACTCCAGG
CAAGAGCTGATGAGGTTGCTGCAGCCCCGGAGCAGATTGCAGCGGACATCCCAGAAGTGGTTGTTTCCCT
TGCATGGGACGAAAGCTTGGCTCCAAAGCATCCAGGCTCAAGGAAAAACATGGCCTGCTATTGCAGAATA
CCAGCGTGCATTGCAGGAGAACGTCGCTATGGAACCTGCATCTACCAGGGAAGACTCTGGGCATTCTGCT
GCTGA

Translation (94 aa):
MRTLAILAAILLVALQAQAEPLQARADEVAAAPEQIAADIPEVVVSLAWDESLAPKHPGSRKNMACYCRI
PACIAGERRYGTCIYQGRLWAFCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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