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Report for CCDS305.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
305.1 Public Homo sapiens 1 FGR 24 110 108 CCDS HistoryNCBI Gene:2268Re-query CCDS DB by CCDS ID:305.1Re-query CCDS DB by GeneID:2268See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 305.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374003.7 ENSP00000363115.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374003.7Link to Ensembl Protein Viewer:ENSP00000363115.3Re-query CCDS DB by Nucleotide ID:ENST00000374003Re-query CCDS DB by Protein ID:ENSP00000363115
Original member Current member EBI ENST00000374004.5 ENSP00000363116.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374004.5Link to Ensembl Protein Viewer:ENSP00000363116.1Re-query CCDS DB by Nucleotide ID:ENST00000374004Re-query CCDS DB by Protein ID:ENSP00000363116
Original member Current member EBI ENST00000374005.8 ENSP00000363117.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374005.8Link to Ensembl Protein Viewer:ENSP00000363117.3Re-query CCDS DB by Nucleotide ID:ENST00000374005Re-query CCDS DB by Protein ID:ENSP00000363117
Original member Current member EBI ENST00000399173.5 ENSP00000382126.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399173.5Link to Ensembl Protein Viewer:ENSP00000382126.1Re-query CCDS DB by Nucleotide ID:ENST00000399173Re-query CCDS DB by Protein ID:ENSP00000382126
Original member Current member NCBI NM_001042729.2 NP_001036194.1 Accepted alive Link to Nucleotide Sequence:NM_001042729.2Link to Protein Sequence:NP_001036194.1Re-query CCDS DB by Nucleotide ID:NM_001042729Re-query CCDS DB by Protein ID:NP_001036194Link to BLAST:NP_001036194.1
Original member Current member NCBI NM_001042747.2 NP_001036212.1 Accepted alive Link to Nucleotide Sequence:NM_001042747.2Link to Protein Sequence:NP_001036212.1Re-query CCDS DB by Nucleotide ID:NM_001042747Re-query CCDS DB by Protein ID:NP_001036212Link to BLAST:NP_001036212.1
Original member Current member NCBI NM_005248.3 NP_005239.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005248.3Link to Protein Sequence:NP_005239.1Re-query CCDS DB by Nucleotide ID:NM_005248Re-query CCDS DB by Protein ID:NP_005239Link to BLAST:NP_005239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036194.1 529 P09769 529 100% 0 0
NP_001036212.1 529 P09769 529 100% 0 0
NP_005239.1 529 P09769 529 100% 0 0

Chromosomal Locations for CCDS 305.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 27612914 27613122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27613219 27613350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27614430 27614583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27614850 27614926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27615434 27615613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27615689 27615844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27616857 27617006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27617193 27617296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27621559 27621657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27623042 27623144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 27623691 27623916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1590 nt):
ATGGGCTGTGTGTTCTGCAAGAAATTGGAGCCGGTGGCCACGGCCAAGGAGGATGCTGGCCTGGAAGGGG
ACTTCAGAAGCTACGGGGCAGCAGACCACTATGGGCCTGACCCCACTAAGGCCCGGCCTGCATCCTCATT
TGCCCACATCCCCAACTACAGCAACTTCTCCTCTCAGGCCATCAACCCTGGCTTCCTTGATAGTGGCACC
ATCAGGGGTGTGTCAGGGATTGGGGTGACCCTGTTCATTGCCCTGTATGACTATGAGGCTCGAACTGAGG
ATGACCTCACCTTCACCAAGGGCGAGAAGTTCCACATCCTGAACAATACTGAAGGTGACTGGTGGGAGGC
TCGGTCTCTCAGCTCCGGAAAAACTGGCTGCATTCCCAGCAACTACGTGGCCCCTGTTGACTCAATCCAA
GCTGAAGAGTGGTACTTTGGAAAGATTGGGAGAAAGGATGCAGAGAGGCAGCTGCTTTCACCAGGCAACC
CCCAGGGGGCCTTTCTCATTCGGGAAAGCGAGACCACCAAAGGTGCCTACTCCCTGTCCATCCGGGACTG
GGATCAGACCAGAGGCGATCATGTGAAGCATTACAAGATCCGCAAACTGGACATGGGCGGCTACTACATC
ACCACACGGGTTCAGTTCAACTCGGTGCAGGAGCTGGTGCAGCACTACATGGAGGTGAATGACGGGCTGT
GCAACCTGCTCATCGCGCCCTGCACCATCATGAAGCCGCAGACGCTGGGCCTGGCCAAGGACGCCTGGGA
GATCAGCCGCAGCTCCATCACGCTGGAGCGCCGGCTGGGCACCGGCTGCTTCGGGGATGTGTGGCTGGGC
ACGTGGAACGGCAGCACTAAGGTGGCGGTGAAGACGCTGAAGCCGGGCACCATGTCCCCGAAGGCCTTCC
TGGAGGAGGCGCAGGTCATGAAGCTGCTGCGGCACGACAAGCTGGTGCAGCTGTACGCCGTGGTGTCGGA
GGAGCCCATCTACATCGTGACCGAGTTCATGTGTCACGGCAGCTTGCTGGATTTTCTCAAGAACCCAGAG
GGCCAGGATTTGAGGCTGCCCCAATTGGTGGACATGGCAGCCCAGGTAGCTGAGGGCATGGCCTACATGG
AACGCATGAACTACATTCACCGCGACCTGAGGGCAGCCAACATCCTGGTTGGGGAGCGGCTGGCGTGCAA
GATCGCAGACTTTGGCTTGGCGCGTCTCATCAAGGACGATGAGTACAACCCCTGCCAAGGTTCCAAGTTC
CCCATCAAGTGGACAGCCCCAGAAGCTGCCCTCTTTGGCAGATTCACCATCAAGTCAGACGTGTGGTCCT
TTGGGATCCTGCTCACTGAGCTCATCACCAAGGGCCGAATCCCCTACCCAGGCATGAATAAACGGGAAGT
GTTGGAACAGGTGGAGCAGGGCTACCACATGCCGTGCCCTCCAGGCTGCCCAGCATCCCTGTACGAGGCC
ATGGAACAGACCTGGCGTCTGGACCCGGAGGAGAGGCCTACCTTCGAGTACCTGCAGTCCTTCCTGGAGG
ACTACTTCACCTCCGCTGAACCACAGTACCAGCCCGGGGATCAGACATAG

Translation (529 aa):
MGCVFCKKLEPVATAKEDAGLEGDFRSYGAADHYGPDPTKARPASSFAHIPNYSNFSSQAINPGFLDSGT
IRGVSGIGVTLFIALYDYEARTEDDLTFTKGEKFHILNNTEGDWWEARSLSSGKTGCIPSNYVAPVDSIQ
AEEWYFGKIGRKDAERQLLSPGNPQGAFLIRESETTKGAYSLSIRDWDQTRGDHVKHYKIRKLDMGGYYI
TTRVQFNSVQELVQHYMEVNDGLCNLLIAPCTIMKPQTLGLAKDAWEISRSSITLERRLGTGCFGDVWLG
TWNGSTKVAVKTLKPGTMSPKAFLEEAQVMKLLRHDKLVQLYAVVSEEPIYIVTEFMCHGSLLDFLKNPE
GQDLRLPQLVDMAAQVAEGMAYMERMNYIHRDLRAANILVGERLACKIADFGLARLIKDDEYNPCQGSKF
PIKWTAPEAALFGRFTIKSDVWSFGILLTELITKGRIPYPGMNKREVLEQVEQGYHMPCPPGCPASLYEA
MEQTWRLDPEERPTFEYLQSFLEDYFTSAEPQYQPGDQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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