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Report for CCDS41287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41287.1 Public Homo sapiens 1 UBXN11 24 110 108 CCDS HistoryNCBI Gene:91544Re-query CCDS DB by CCDS ID:41287.1Re-query CCDS DB by GeneID:91544See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000314675.11 ENSP00000324721.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000314675.11Link to Ensembl Protein Viewer:ENSP00000324721.7Re-query CCDS DB by Nucleotide ID:ENST00000314675Re-query CCDS DB by Protein ID:ENSP00000324721
Original member Current member NCBI NM_001077262.2 NP_001070730.1 Accepted alive Link to Nucleotide Sequence:NM_001077262.2Link to Protein Sequence:NP_001070730.1Re-query CCDS DB by Nucleotide ID:NM_001077262Re-query CCDS DB by Protein ID:NP_001070730Link to BLAST:NP_001070730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070730.1 400 Q5T124-3 400 100% 0 0

Chromosomal Locations for CCDS 41287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 26282299 26282569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282649 26282789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26282864 26282937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284142 26284245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26284362 26284482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285464 26285541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26285823 26286037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26300926 26301024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26301694 26301722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 26302813 26302883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGCTCACCTTTGGCCTCCCTTAGCAAGACCCGAAAAGTGCCCCTGCCCTCGGAGCCTATGAATCCTG
GGAGGCGAGGAATCCGCATCTATGGAGATGAAGATGAGGTGGACATGTTGAGTGATGGGTGTGGCTCAGA
AGAAAAGATCTCAGTCCCTTCCTGCTATGGCGGCATAGGTGCCCCTGTGAGTCGGCAAGGGGACTCATTG
GCGCCCCCTGAGGTGGACTTTGACAGGCTGCTGGCCAGCCTGCAGGATCTTAGTGAGCTGGTGGTAGAGG
GTGACACCCAAGTGACACCAGTGCCCGGCGGGGCACGGCTGCGTACCCTCGAGCCCATCCCGCTGAAGCT
CTACCGGAATGGCATCATGATGTTCGACGGGCCCTTCCAGCCCTTCTACGATCCCTCCACACAGCGCTGC
CTCCGAGACATATTGGATGGCTTCTTTCCCTCAGAGCTCCAGCGACTGTACCCCAATGGGGTCCCCTTTA
AGGTGAGTGACTTGCGCAATCAGGTCTACCTGGAGGATGGACTGGACCCCTTCCCAGGCGAGGGCCGTGT
GGTGGGCAGGCAGCTGATGCACAAGGCCTTGGACAGGGTGGAGGAGCACCCAGGCTCCAGGATGACTGCT
GAGAAATTTCTGAACAGGCTCCCCAAGTTTGTGATCCGGCAAGGCGAGGTGATTGACATCCGGGGCCCCA
TCAGGGACACCTTGCAGAACTGCTGCCCATTGCCTGCCCGGATCCAGGAGATTGTGGTGGAGACGCCCAC
CTTGGCCGCTGAGCGAGAGAGGAGCCAGGAGTCACCCAACACGCCGGCACCCCCGCTCTCCATGCTGCGC
ATCAAGTCTGAGAATGGGGAACAGGCCTTCCTACTGATGATGCAGCCTGACAACACCATTGGGGACGTGC
GAGCTCTGCTAGCGCAGGCCAGGGTCATGGATGCCTCTGCCTTTGAGATCTTCAGCACATTCCCGCCCAC
CCTCTACCAGGACGATACACTCACGCTGCAGGCTGCAGGCCTTGTGCCCAAAGCAGCACTGCTGCTGCGG
GCACGCCGAGCCCCGAAGTCCAGCCTGAAATTCAGTCCTGGTCCCTGTCCCGGTCCCGGTCCCGGCCCCA
GTCCCGGTCCCGGTCCCGGCCCCAGTCCCGGTCCCGGTCCCGGCCCCAGTCCCTGTCCTGGACCCAGTCC
CAGCCCCCAATAA

Translation (400 aa):
MSSPLASLSKTRKVPLPSEPMNPGRRGIRIYGDEDEVDMLSDGCGSEEKISVPSCYGGIGAPVSRQGDSL
APPEVDFDRLLASLQDLSELVVEGDTQVTPVPGGARLRTLEPIPLKLYRNGIMMFDGPFQPFYDPSTQRC
LRDILDGFFPSELQRLYPNGVPFKVSDLRNQVYLEDGLDPFPGEGRVVGRQLMHKALDRVEEHPGSRMTA
EKFLNRLPKFVIRQGEVIDIRGPIRDTLQNCCPLPARIQEIVVETPTLAAERERSQESPNTPAPPLSMLR
IKSENGEQAFLLMMQPDNTIGDVRALLAQARVMDASAFEIFSTFPPTLYQDDTLTLQAAGLVPKAALLLR
ARRAPKSSLKFSPGPCPGPGPGPSPGPGPGPSPGPGPGPSPCPGPSPSPQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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