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Report for CCDS30892.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30892.1 Public Homo sapiens 1 PEAR1 24 110 108 CCDS HistoryNCBI Gene:375033Re-query CCDS DB by CCDS ID:30892.1Re-query CCDS DB by GeneID:375033See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30892.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000292357.8 ENSP00000292357.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000292357.8Link to Ensembl Protein Viewer:ENSP00000292357.7Re-query CCDS DB by Nucleotide ID:ENST00000292357Re-query CCDS DB by Protein ID:ENSP00000292357
Original member Current member EBI ENST00000338302.7 ENSP00000344465.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000338302.7Link to Ensembl Protein Viewer:ENSP00000344465.3Re-query CCDS DB by Nucleotide ID:ENST00000338302Re-query CCDS DB by Protein ID:ENSP00000344465
Original member Current member NCBI NM_001080471.3 NP_001073940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080471.3Link to Protein Sequence:NP_001073940.1Re-query CCDS DB by Nucleotide ID:NM_001080471Re-query CCDS DB by Protein ID:NP_001073940Link to BLAST:NP_001073940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073940.1 1037 Q5VY43 1037 100% 0 0

Chromosomal Locations for CCDS 30892.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156903927 156904027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156904748 156904852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156905324 156905424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156906276 156906368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156906637 156906880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156907610 156907730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156907915 156908051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156908128 156908340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156908655 156908829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156908916 156909036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156909751 156909914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156910006 156910108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156910234 156910380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156910618 156910743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156912247 156912375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156912494 156912622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156912770 156912982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156913194 156913282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156913391 156913523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156913692 156913760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156913852 156914100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156914647 156914798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3114 nt):
ATGTCACCGCCTCTGTGTCCCCTCCTTCTCCTGGCTGTGGGCCTGCGGCTGGCTGGAACTCTCAACCCCA
GTGATCCCAATACCTGCAGCTTCTGGGAAAGCTTCACTACCACCACCAAGGAGTCCCACTCCCGCCCCTT
CAGCCTGCTCCCCTCAGAGCCCTGCGAGCGGCCCTGGGAGGGCCCCCATACTTGCCCCCAGCCCACGGTT
GTATACCGGACCGTGTACCGTCAGGTGGTGAAGACGGACCACCGCCAGCGCCTGCAGTGCTGCCATGGCT
TCTATGAGAGCAGGGGGTTCTGTGTCCCGCTCTGTGCCCAGGAGTGTGTCCATGGCCGTTGTGTGGCACC
CAATCAGTGCCAATGTGTGCCAGGCTGGCGGGGCGACGACTGTTCCAGTGAGTGTGCCCCAGGAATGTGG
GGGCCACAGTGTGACAAGCCCTGCAGCTGCGGCAACAACAGCTCGTGTGATCCCAAGAGTGGGGTATGTT
CTTGCCCTTCTGGTCTGCAGCCCCCGAACTGCCTTCAGCCCTGTACCCCTGGCTACTATGGCCCTGCCTG
CCAGTTCCGCTGCCAGTGCCATGGGGCACCCTGCGATCCCCAGACTGGAGCCTGCTTCTGCCCCGCAGAG
AGAACTGGGCCCAGCTGTGACGTGTCCTGTTCCCAGGGCACTTCTGGCTTCTTCTGCCCCAGCACCCATT
CTTGCCAAAATGGAGGTGTCTTCCAAACCCCACAGGGCTCCTGCAGCTGCCCCCCTGGCTGGATGGGCAC
CATCTGCTCCCTGCCCTGCCCAGAGGGCTTTCACGGACCCAACTGCTCCCAGGAATGTCGCTGCCACAAC
GGCGGCCTCTGTGACCGATTCACTGGGCAGTGCCGCTGCGCTCCGGGTTACACTGGGGATCGGTGCCGGG
AGGAGTGCCCGGTGGGCCGCTTTGGGCAGGACTGTGCTGAGACGTGCGACTGCGCCCCGGACGCCCGTTG
CTTCCCGGCCAACGGCGCATGTCTGTGCGAACACGGCTTCACTGGGGACCGCTGCACGGATCGCCTCTGC
CCCGACGGCTTCTACGGTCTCAGCTGCCAGGCCCCCTGCACCTGCGACCGGGAGCACAGCCTCAGCTGCC
ACCCGATGAACGGGGAGTGCTCCTGCCTGCCGGGCTGGGCGGGCCTCCACTGCAACGAGAGCTGCCCGCA
GGACACGCATGGGCCAGGGTGCCAGGAGCACTGTCTCTGCCTGCACGGTGGCGTCTGCCAGGCTACCAGC
GGCCTCTGTCAGTGCGCGCCGGGTTACACGGGCCCTCACTGTGCTAGTCTTTGTCCTCCTGACACCTACG
GTGTCAACTGTTCTGCACGCTGCTCATGTGAAAATGCCATCGCCTGCTCACCCATCGACGGCGAGTGCGT
CTGCAAGGAAGGTTGGCAGCGTGGTAACTGCTCTGTGCCCTGCCCACCCGGAACCTGGGGCTTCAGTTGC
AATGCCAGCTGCCAGTGTGCCCATGAGGCAGTCTGCAGCCCCCAAACTGGAGCCTGTACCTGCACCCCTG
GGTGGCATGGGGCCCACTGCCAGCTGCCCTGTCCGAAGGGGCAGTTTGGAGAAGGTTGTGCCAGTCGCTG
TGACTGTGACCACTCTGATGGCTGTGACCCTGTTCATGGACGCTGTCAGTGCCAGGCTGGCTGGATGGGT
GCCCGCTGCCACCTGTCCTGCCCTGAGGGCTTATGGGGAGTCAACTGTAGCAACACCTGCACCTGCAAGA
ATGGGGGCACCTGTCTCCCTGAGAATGGCAACTGCGTGTGTGCACCCGGATTCCGGGGCCCCTCCTGCCA
GAGATCCTGTCAGCCTGGCCGCTATGGCAAACGCTGTGTGCCCTGCAAGTGCGCTAACCACTCCTTCTGC
CACCCCTCGAACGGGACCTGCTACTGCCTGGCTGGCTGGACAGGCCCCGACTGCTCCCAGCCATGCCCTC
CAGGACACTGGGGAGAAAACTGTGCCCAGACCTGCCAATGTCACCATGGTGGGACCTGCCATCCCCAGGA
TGGGAGCTGTATCTGCCCCCTAGGCTGGACTGGACACCACTGCTTAGAAGGCTGCCCTCTGGGGACATTT
GGTGCTAACTGCTCCCAGCCATGCCAGTGTGGTCCTGGAGAAAAGTGCCACCCAGAGACTGGGGCCTGTG
TATGTCCCCCAGGGCACAGTGGTGCACCTTGCAGGATTGGAATCCAGGAGCCCTTTACTGTGATGCCGAC
CACTCCAGTAGCGTATAACTCGCTGGGTGCAGTGATTGGCATTGCAGTGCTGGGGTCCCTTGTGGTAGCC
CTGGTGGCACTGTTCATTGGCTATCGGCACTGGCAAAAAGGCAAGGAGCACCACCACCTGGCTGTGGCTT
ACAGCAGCGGGCGCCTGGACGGCTCCGAGTATGTCATGCCAGATGTCCCTCCGAGCTACAGTCACTACTA
CTCCAACCCCAGCTACCACACCCTGTCGCAGTGCTCCCCAAACCCCCCACCCCCTAACAAGGTTCCAGGC
CCGCTCTTTGCCAGCCTGCAGAACCCTGAGCGGCCAGGTGGGGCCCAAGGGCATGATAACCACACCACCC
TGCCTGCTGACTGGAAGCACCGCCGGGAGCCCCCTCCAGGGCCTCTGGACAGGGGGAGCAGCCGCCTGGA
CCGAAGCTACAGCTATAGCTACAGCAATGGCCCAGGCCCATTCTACAATAAAGGGCTCATCTCTGAAGAG
GAGCTCGGGGCCAGTGTGGCTTCCCTGAGCAGTGAGAACCCATATGCCACCATCCGGGACCTGCCCAGCT
TGCCAGGGGGCCCCCGGGAGAGCAGCTACATGGAGATGAAAGGCCCTCCCTCAGGATCTCCCCCCAGGCA
GCCTCCTCAGTTCTGGGACAGCCAGAGGCGGCGGCAACCCCAGCCACAGAGAGACAGTGGCACCTACGAG
CAGCCCAGCCCCCTGATCCATGACCGAGACTCTGTGGGCTCCCAGCCCCCTCTGCCTCCGGGCCTACCCC
CCGGCCACTATGACTCACCCAAGAACAGCCACATCCCTGGACATTATGACTTGCCTCCAGTACGGCATCC
CCCATCACCTCCACTTCGACGCCAGGACCGTTGA

Translation (1037 aa):
MSPPLCPLLLLAVGLRLAGTLNPSDPNTCSFWESFTTTTKESHSRPFSLLPSEPCERPWEGPHTCPQPTV
VYRTVYRQVVKTDHRQRLQCCHGFYESRGFCVPLCAQECVHGRCVAPNQCQCVPGWRGDDCSSECAPGMW
GPQCDKPCSCGNNSSCDPKSGVCSCPSGLQPPNCLQPCTPGYYGPACQFRCQCHGAPCDPQTGACFCPAE
RTGPSCDVSCSQGTSGFFCPSTHSCQNGGVFQTPQGSCSCPPGWMGTICSLPCPEGFHGPNCSQECRCHN
GGLCDRFTGQCRCAPGYTGDRCREECPVGRFGQDCAETCDCAPDARCFPANGACLCEHGFTGDRCTDRLC
PDGFYGLSCQAPCTCDREHSLSCHPMNGECSCLPGWAGLHCNESCPQDTHGPGCQEHCLCLHGGVCQATS
GLCQCAPGYTGPHCASLCPPDTYGVNCSARCSCENAIACSPIDGECVCKEGWQRGNCSVPCPPGTWGFSC
NASCQCAHEAVCSPQTGACTCTPGWHGAHCQLPCPKGQFGEGCASRCDCDHSDGCDPVHGRCQCQAGWMG
ARCHLSCPEGLWGVNCSNTCTCKNGGTCLPENGNCVCAPGFRGPSCQRSCQPGRYGKRCVPCKCANHSFC
HPSNGTCYCLAGWTGPDCSQPCPPGHWGENCAQTCQCHHGGTCHPQDGSCICPLGWTGHHCLEGCPLGTF
GANCSQPCQCGPGEKCHPETGACVCPPGHSGAPCRIGIQEPFTVMPTTPVAYNSLGAVIGIAVLGSLVVA
LVALFIGYRHWQKGKEHHHLAVAYSSGRLDGSEYVMPDVPPSYSHYYSNPSYHTLSQCSPNPPPPNKVPG
PLFASLQNPERPGGAQGHDNHTTLPADWKHRREPPPGPLDRGSSRLDRSYSYSYSNGPGPFYNKGLISEE
ELGASVASLSSENPYATIRDLPSLPGGPRESSYMEMKGPPSGSPPRQPPQFWDSQRRRQPQPQRDSGTYE
QPSPLIHDRDSVGSQPPLPPGLPPGHYDSPKNSHIPGHYDLPPVRHPPSPPLRRQDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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