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Report for CCDS41284.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41284.1 Public Homo sapiens 1 MTFR1L 24 110 108 CCDS HistoryNCBI Gene:56181Re-query CCDS DB by CCDS ID:41284.1Re-query CCDS DB by GeneID:56181See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41284.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374300.7 ENSP00000363418.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374300.7Link to Ensembl Protein Viewer:ENSP00000363418.3Re-query CCDS DB by Nucleotide ID:ENST00000374300Re-query CCDS DB by Protein ID:ENSP00000363418
Original member Current member EBI ENST00000374301.7 ENSP00000363419.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374301.7Link to Ensembl Protein Viewer:ENSP00000363419.3Re-query CCDS DB by Nucleotide ID:ENST00000374301Re-query CCDS DB by Protein ID:ENSP00000363419
Original member Current member EBI ENST00000374303.7 ENSP00000363421.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374303.7Link to Ensembl Protein Viewer:ENSP00000363421.2Re-query CCDS DB by Nucleotide ID:ENST00000374303Re-query CCDS DB by Protein ID:ENSP00000363421
Original member Current member NCBI NM_001099625.2 NP_001093095.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099625.2Link to Protein Sequence:NP_001093095.1Re-query CCDS DB by Nucleotide ID:NM_001099625Re-query CCDS DB by Protein ID:NP_001093095Link to BLAST:NP_001093095.1
Original member Current member NCBI NM_001099626.2 NP_001093096.1 Accepted alive Link to Nucleotide Sequence:NM_001099626.2Link to Protein Sequence:NP_001093096.1Re-query CCDS DB by Nucleotide ID:NM_001099626Re-query CCDS DB by Protein ID:NP_001093096Link to BLAST:NP_001093096.1
Original member Current member NCBI NM_019557.6 NP_062457.3 Accepted alive Link to Nucleotide Sequence:NM_019557.6Link to Protein Sequence:NP_062457.3Re-query CCDS DB by Nucleotide ID:NM_019557Re-query CCDS DB by Protein ID:NP_062457Link to BLAST:NP_062457.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093095.1 292 Q9H019-1 292 100% 0 0
NP_001093096.1 292 Q9H019-1 292 100% 0 0
NP_062457.3 292 Q9H019-1 292 100% 0 0

Chromosomal Locations for CCDS 41284.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 25823105 25823128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25823644 25823748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25826302 25826411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25826615 25826826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25829509 25829830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 25831921 25832026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGTCAGGAATGGAAGCCACTGTGACCATCCCAATCTGGCAAAACAAGCCACATGGGGCTGCTCGAAGTG
TAGTAAGAAGAATTGGGACCAACCTACCCTTGAAGCCGTGTGCCCGGGCGTCCTTTGAGACCCTGCCCAA
CATCTCTGACCTGTGTTTGAGAGATGTGCCCCCAGTCCCTACCCTGGCTGACATCGCCTGGATTGCTGCG
GATGAAGAGGAGACATATGCCCGGGTCAGGAGTGATACGCGCCCCCTGAGGCACACCTGGAAACCCAGCC
CTCTGATTGTCATGCAGCGCAATGCCTCTGTTCCCAACCTGCGTGGGTCCGAGGAGAGGCTTCTGGCCCT
GAAGAAGCCAGCTCTGCCAGCCCTAAGCCGCACTACTGAGCTGCAGGACGAGCTGAGCCACTTGCGCAGC
CAGATTGCAAAGATAGTGGCAGCTGATGCAGCTTCGGCTTCATTAACGCCAGATTTCTTATCTCCAGGAA
GTTCAAATGTCTCTTCTCCCTTACCTTGTTTTGGATCCTCATTCCACTCTACAACTTCCTTTGTCATTAG
TGACATCACCGAGGAGACAGAGGTGGAGGTCCCTGAGCTTCCATCAGTCCCCCTGCTTTGTTCTGCCAGC
CCTGAATGTTGCAAACCAGAACACAAAGCTGCCTGCAGTTCGTCTGAAGAGGATGACTGCGTCTCTTTGT
CCAAGGCCAGCAGCTTTGCAGACATGATGGGTATCCTGAAGGACTTTCACCGAATGAAACAGAGTCAAGA
TCTGAACCGGAGTTTATTGAAGGAGGAAGACCCTGCTGTGCTTATCTCTGAGGTCCTAAGGAGGAAGTTT
GCTCTAAAGGAAGAAGATATCAGTAGAAAAGGAAATTGA

Translation (292 aa):
MSGMEATVTIPIWQNKPHGAARSVVRRIGTNLPLKPCARASFETLPNISDLCLRDVPPVPTLADIAWIAA
DEEETYARVRSDTRPLRHTWKPSPLIVMQRNASVPNLRGSEERLLALKKPALPALSRTTELQDELSHLRS
QIAKIVAADAASASLTPDFLSPGSSNVSSPLPCFGSSFHSTTSFVISDITEETEVEVPELPSVPLLCSAS
PECCKPEHKAACSSSEEDDCVSLSKASSFADMMGILKDFHRMKQSQDLNRSLLKEEDPAVLISEVLRRKF
ALKEEDISRKGN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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