NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46945.1 Public Homo sapiens 3 MLF1 24 110 108 CCDS HistoryNCBI Gene:4291Re-query CCDS DB by CCDS ID:46945.1Re-query CCDS DB by GeneID:4291See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359117.9 ENSP00000352025.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359117.9Link to Ensembl Protein Viewer:ENSP00000352025.5Re-query CCDS DB by Nucleotide ID:ENST00000359117Re-query CCDS DB by Protein ID:ENSP00000352025
Original member Current member EBI ENST00000482628.5 ENSP00000417141.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482628.5Link to Ensembl Protein Viewer:ENSP00000417141.1Re-query CCDS DB by Nucleotide ID:ENST00000482628Re-query CCDS DB by Protein ID:ENSP00000417141
Original member Current member EBI ENST00000484955.5 ENSP00000417835.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000484955.5Link to Ensembl Protein Viewer:ENSP00000417835.1Re-query CCDS DB by Nucleotide ID:ENST00000484955Re-query CCDS DB by Protein ID:ENSP00000417835
Original member Current member EBI ENST00000651874.1 ENSP00000498363.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651874.1Link to Ensembl Protein Viewer:ENSP00000498363.1Re-query CCDS DB by Nucleotide ID:ENST00000651874Re-query CCDS DB by Protein ID:ENSP00000498363
Original member Current member EBI ENST00000651984.1 ENSP00000499162.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000651984.1Link to Ensembl Protein Viewer:ENSP00000499162.2Re-query CCDS DB by Nucleotide ID:ENST00000651984Re-query CCDS DB by Protein ID:ENSP00000499162
Original member Current member NCBI NM_001130156.3 NP_001123628.1 Accepted alive Link to Nucleotide Sequence:NM_001130156.3Link to Protein Sequence:NP_001123628.1Re-query CCDS DB by Nucleotide ID:NM_001130156Re-query CCDS DB by Protein ID:NP_001123628Link to BLAST:NP_001123628.1
Original member Current member NCBI NM_001130157.3 NP_001123629.1 Accepted alive Link to Nucleotide Sequence:NM_001130157.3Link to Protein Sequence:NP_001123629.1Re-query CCDS DB by Nucleotide ID:NM_001130157Re-query CCDS DB by Protein ID:NP_001123629Link to BLAST:NP_001123629.1
Original member Current member NCBI NM_001369784.1 NP_001356713.1 Accepted alive Link to Nucleotide Sequence:NM_001369784.1Link to Protein Sequence:NP_001356713.1Re-query CCDS DB by Nucleotide ID:NM_001369784Re-query CCDS DB by Protein ID:NP_001356713Link to BLAST:NP_001356713.1
Original member Current member NCBI NM_001378847.1 NP_001365776.1 Accepted alive Link to Nucleotide Sequence:NM_001378847.1Link to Protein Sequence:NP_001365776.1Re-query CCDS DB by Nucleotide ID:NM_001378847Re-query CCDS DB by Protein ID:NP_001365776Link to BLAST:NP_001365776.1
Original member Current member NCBI NM_001378848.1 NP_001365777.1 Accepted alive Link to Nucleotide Sequence:NM_001378848.1Link to Protein Sequence:NP_001365777.1Re-query CCDS DB by Nucleotide ID:NM_001378848Re-query CCDS DB by Protein ID:NP_001365777Link to BLAST:NP_001365777.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123628.1 243 P58340-5 243 100% 0 0
NP_001123629.1 243 P58340-5 243 100% 0 0
NP_001356713.1 243 P58340-5 243 100% 0 0
NP_001365776.1 243 P58340-5 243 100% 0 0
NP_001365777.1 243 P58340-5 243 100% 0 0

Chromosomal Locations for CCDS 46945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 158592462 158592581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158596862 158596945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158598080 158598208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158600014 158600173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158602807 158602939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 158605097 158605202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGCGACAGATGATAAGAAGTTTTTCTGAACCCTTTGGAAGAGACTTGCTCAGTATCTCTGATGGTAGAG
GGAGAGCTCATAATCGTAGAGGACATAATGATGGTGAAGATTCTTTGACTCATACAGATGTCAGCTCTTT
CCAGACAATGGACCAAATGGTGTCAAATATGAGAAACTATATGCAGAAATTAGAAAGAAACTTCGGTCAA
CTTTCAGTGGATCCAAATGGACATTCATTTTGTTCTTCCTCAGTTATGACTTATTCCAAAATAGGAGATG
AACCGCCAAAGGTTTTTCAGGCCTCAACTCAAACTCGTCGAGCTCCAGGAGGAATAAAGGAAACCAGGAA
AGCAATGAGAGATTCTGACAGTGGACTAGAAAAAATGGCTATTGGTCATCATATCCATGACCGAGCTCAT
GTCATTAAAAAGTCAAAGAACAAGAAGACTGGAGATGAAGAGGTCAACCAGGAGTTCATCAATATGAATG
AAAGTGATGCTCATGCTTTTGATGAGGAGTGGCAAAGTGAGGTTTTGAAGTACAAACCAGGACGACACAA
TCTAGGAAACACTAGAATGAGAAGTGTTGGCCATGAGAATCCTGGCTCCCGAGAACTTAAAAGAAGGGAG
AAACCTCAACAAAGTCCAGCCATTGAACATGGAAGGAGATCAAATGTTTTGGGGGACAAACTCCACATCA
AAGGCTCATCTGTGAAAAGCAACAAAAAATAA

Translation (243 aa):
MRQMIRSFSEPFGRDLLSISDGRGRAHNRRGHNDGEDSLTHTDVSSFQTMDQMVSNMRNYMQKLERNFGQ
LSVDPNGHSFCSSSVMTYSKIGDEPPKVFQASTQTRRAPGGIKETRKAMRDSDSGLEKMAIGHHIHDRAH
VIKKSKNKKTGDEEVNQEFINMNESDAHAFDEEWQSEVLKYKPGRHNLGNTRMRSVGHENPGSRELKRRE
KPQQSPAIEHGRRSNVLGDKLHIKGSSVKSNKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH