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Report for CCDS87777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87777.1 Public Homo sapiens X PABIR3 24 110 108 CCDS HistoryNCBI Gene:159091Re-query CCDS DB by CCDS ID:87777.1Re-query CCDS DB by GeneID:159091See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87777.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000475361.1 ENSP00000495200.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000475361.1Link to Ensembl Protein Viewer:ENSP00000495200.1Re-query CCDS DB by Nucleotide ID:ENST00000475361Re-query CCDS DB by Protein ID:ENSP00000495200
Original member Current member EBI ENST00000482240.5 ENSP00000495775.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000482240.5Link to Ensembl Protein Viewer:ENSP00000495775.1Re-query CCDS DB by Nucleotide ID:ENST00000482240Re-query CCDS DB by Protein ID:ENSP00000495775
Original member Current member NCBI NM_001170781.2 NP_001164252.1 Accepted alive Link to Nucleotide Sequence:NM_001170781.2Link to Protein Sequence:NP_001164252.1Re-query CCDS DB by Nucleotide ID:NM_001170781Re-query CCDS DB by Protein ID:NP_001164252Link to BLAST:NP_001164252.1
Original member Current member NCBI NM_001365746.1 NP_001352675.1 Accepted alive Link to Nucleotide Sequence:NM_001365746.1Link to Protein Sequence:NP_001352675.1Re-query CCDS DB by Nucleotide ID:NM_001365746Re-query CCDS DB by Protein ID:NP_001352675Link to BLAST:NP_001352675.1

Chromosomal Locations for CCDS 87777.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 134807599 134807708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 134809187 134809373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (297 nt):
ATGGCACAGGAGAAAATGAAACTAGGTTTCAAGTCGCTGCCGAGTTCCACTACCGCAGACGGCAACATTC
TGAGAAGAGTCAACAGTGCCCCTTTGATCAATGGACTTGGACGGAGTCTCACTGTGTCGCCCAGGCTGGA
GTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGAC
TCCCGAGTAGCTGGGACTTCAGGCACCCGCCACCACGCCCACCTAATTTTTTGTATTTTTAGTAGAGACG
GGGTTTCACCGTGTTAG

Translation (98 aa):
MAQEKMKLGFKSLPSSTTADGNILRRVNSAPLINGLGRSLTVSPRLECSGMISAHCNLCLPGSSDSPASD
SRVAGTSGTRHHAHLIFCIFSRDGVSPC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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