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Report for CCDS73125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73125.1 Public Homo sapiens 10 AGAP9 24 110 108 CCDS HistoryNCBI Gene:642517Re-query CCDS DB by CCDS ID:73125.1Re-query CCDS DB by GeneID:642517See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73125.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000452145.6 ENSP00000392206.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452145.6Link to Ensembl Protein Viewer:ENSP00000392206.2Re-query CCDS DB by Nucleotide ID:ENST00000452145Re-query CCDS DB by Protein ID:ENSP00000392206
Original member Current member NCBI NM_001190810.1 NP_001177739.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190810.1Link to Protein Sequence:NP_001177739.1Re-query CCDS DB by Nucleotide ID:NM_001190810Re-query CCDS DB by Protein ID:NP_001177739Link to BLAST:NP_001177739.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177739.1 658 Q5VTM2-2 658 100% 0 0

Chromosomal Locations for CCDS 73125.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 47502152 47503543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47504189 47504240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47507548 47507583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47510171 47510271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47517823 47517857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47520499 47520567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47522866 47522934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47523304 47523526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGGGGAACATACTGACCTGTCGTGTGCACCCTAGCGTCAGCCTCGAGTTTGACCAGCAGCAGGGGTCGG
TGTGTCCCTCTGAATCTGAGATCTATGAGGCAGGAGCTGAGGACAGGATGGCAGGAGCGCCCATGGCTGC
TGCTGTACAGCCTGCTGAGGTGACTGTTGAAGTTGGTGAGGACCTCCACATGCACCAGGTTCGTGACCGG
GAGATGCCTGAAGCTTTGGAGTTTAACCTTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACT
CTCAAACAGATGCTTTGGAGTTTAACTCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACTC
TCAAACAGATGTTGTAGAAATAAGAAGAAGCAACTGTACAAACCATGTATCTACTGAGCGTTTCAGTCAA
CAATACAGCTCGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACAA
TAATATCTGTGACCTTGGAGATACCTCATCATATCACACAAAGAGATGCAGATAGATCTTTGAGCATACC
TGATGAACAGTTACACTCATTTGCGGTTTCCACCGTGCACATTATGAAGAAAAGAAATGGAGGTGGGAGT
TTAAATAACTATTCCTCCTCCATTCCACCGACTCCCAGCACCAGCCAGGAGGACCCTCAGTTCAGTGTTC
CTCCCACTGCCAACACACCCACCCCCGTTTGCAAGCGGTCCATGCGCTGGTCCAACCTGTTTACATCTGA
GAAAGGGAGTGACCCAGACAAAGAGAGGAAAGCCCCGGAGAATCATGCTGACACCATCGGGAGCGGCAGA
GCCATCCCCATTAAACAGGGCATGCTCTTAAAGCGAAGTGGAAAATGGCTGAAGACATGGAAAAAGAAAT
ACGTCACCCTGTGTTCCAATGGCGTGCTCACCTATTATTCAAGCTTAGGTGATTATATGAAGAATATTCA
TAAAAAAGAGATTGACCTTCGGACATCTACCATCAAAGTCCCAGGAAAGTGGCCATCCCTAGCCACATCA
GCCTGTGCACCCATCTCCAGCTCTAAAAGCAATGGCCTATCCAAGGACATGGACACCGGGCTGGGTGACT
CCATATGCTTCAGCCCCGGTATCTCCAGCACCACCAGCCCCAAGCTCAACCCGCCCCCCTCTCCTCATGC
CAATAAAAAGAAACACCTAAAGAAGAAAAGCACCAACAACTTTATGATTGTGTCTGCCACTGGCCAAACG
TGGCACTTTGAAGCCACGACGTATGAGGAGCGGGATGCCTGGGTCCAAGCCATCCAGAGCCAGATCCTGG
CCAGCCTGCAGTCATGCAAGAGCAGTAAAAGCAAGTCCCAGCTGACCAGCCAGAGTGAGGCCATGGCCCT
GCAGTCGATCCAAAACATGCGTGGGAACGCCCACTGTGTGGACTGTGAGACCCAGAATCCTAAGTGGGCC
AGTTTGAACTTGGGAGTCCTCATGTGTATTGAATGCTCAGGTATCCACCGCAGTTTTGGCACCCGCCTTT
CCCGTGTGCGATCTCTGGAGCTGGATGACTGGCCAGTTGAGCTCAGGAAGGTTATGTCATCTATTGGCAA
TGAGCTAGCCAACAGCATCTGGGAAGGGAGCAGCCAGGGGCAGACAAAACCCTCAATAAAGTCCACGAGG
GAAGAGAAGGAATGGTGGATCCGTTCCAAATATGAGGAGAAGCTCTTTCTGGCCCCACTACCCTGCACTG
AGCTGTCCCTGGGCCAGCAGCTGCTGCGGGCCACCACTGATGAGGACCTGCAGACAGCCATCCTGCTGCT
GGCACATGGCTCCCGTGAGGAGGTGAACGAGACCTGTGGGGAGGGAGACGGCTGCACGGCACTCCATCTG
GCCTGCCGCAAGGGGAATGTGGTCCTGGAGCAGCTCCTGACGGGGTGGACGTCATGGCCCGAGATGCCCA
CGGGAACACAGCGCTGA

Translation (658 aa):
MGNILTCRVHPSVSLEFDQQQGSVCPSESEIYEAGAEDRMAGAPMAAAVQPAEVTVEVGEDLHMHQVRDR
EMPEALEFNLSANPEASTIFQRNSQTDALEFNSSANPEASTIFQRNSQTDVVEIRRSNCTNHVSTERFSQ
QYSSCSTIFLDDSTAIQHYLTMTIISVTLEIPHHITQRDADRSLSIPDEQLHSFAVSTVHIMKKRNGGGS
LNNYSSSIPPTPSTSQEDPQFSVPPTANTPTPVCKRSMRWSNLFTSEKGSDPDKERKAPENHADTIGSGR
AIPIKQGMLLKRSGKWLKTWKKKYVTLCSNGVLTYYSSLGDYMKNIHKKEIDLRTSTIKVPGKWPSLATS
ACAPISSSKSNGLSKDMDTGLGDSICFSPGISSTTSPKLNPPPSPHANKKKHLKKKSTNNFMIVSATGQT
WHFEATTYEERDAWVQAIQSQILASLQSCKSSKSKSQLTSQSEAMALQSIQNMRGNAHCVDCETQNPKWA
SLNLGVLMCIECSGIHRSFGTRLSRVRSLELDDWPVELRKVMSSIGNELANSIWEGSSQGQTKPSIKSTR
EEKEWWIRSKYEEKLFLAPLPCTELSLGQQLLRATTDEDLQTAILLLAHGSREEVNETCGEGDGCTALHL
ACRKGNVVLEQLLTGWTSWPEMPTGTQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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