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Report for CCDS31061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31061.1 Public Homo sapiens 1 ARID4B 24 110 108 CCDS HistoryNCBI Gene:51742Re-query CCDS DB by CCDS ID:31061.1Re-query CCDS DB by GeneID:51742See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31061.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264183.9 ENSP00000264183.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264183.9Link to Ensembl Protein Viewer:ENSP00000264183.3Re-query CCDS DB by Nucleotide ID:ENST00000264183Re-query CCDS DB by Protein ID:ENSP00000264183
Original member Current member EBI ENST00000366603.6 ENSP00000355562.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366603.6Link to Ensembl Protein Viewer:ENSP00000355562.2Re-query CCDS DB by Nucleotide ID:ENST00000366603Re-query CCDS DB by Protein ID:ENSP00000355562
Original member Current member NCBI NM_001206794.2 NP_001193723.1 Accepted alive Link to Nucleotide Sequence:NM_001206794.2Link to Protein Sequence:NP_001193723.1Re-query CCDS DB by Nucleotide ID:NM_001206794Re-query CCDS DB by Protein ID:NP_001193723Link to BLAST:NP_001193723.1
Original member Current member NCBI NM_016374.6 NP_057458.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016374.6Link to Protein Sequence:NP_057458.4Re-query CCDS DB by Nucleotide ID:NM_016374Re-query CCDS DB by Protein ID:NP_057458Link to BLAST:NP_057458.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193723.1 1312 Q4LE39-1 1312 100% 0 0
NP_057458.4 1312 Q4LE39-1 1312 100% 0 0

Chromosomal Locations for CCDS 31061.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 235168525 235168652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235172618 235172764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235175184 235175399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235177800 235177913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235181585 235182793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235194013 235194211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235196031 235196115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235213769 235214026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235219793 235219968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235220302 235220545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235221565 235221662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235223166 235223260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235224703 235224775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235229231 235229385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235231113 235231189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235234413 235234492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235240313 235240451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235246420 235246511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235252730 235252809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235255660 235255750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235257160 235257225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235260642 235260752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 235326914 235326919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3939 nt):
ATGAAGGCCCTTGATGAGCCTCCCTATTTGACAGTGGGCACTGATGTGAGTGCTAAATACAGAGGAGCCT
TTTGTGAAGCCAAGATCAAGACAGCAAAAAGACTTGTCAAAGTCAAGGTGACATTTAGACATGATTCTTC
AACAGTGGAAGTTCAGGATGACCACATAAAGGGCCCACTAAAGGTAGGAGCTATTGTGGAAGTGAAGAAT
CTTGATGGTGCATATCAGGAAGCTGTTATCAATAAACTAACAGATGCGAGTTGGTACACTGTAGTTTTTG
ATGACGGAGATGAGAAGACACTGAGACGATCTTCACTGTGCCTGAAAGGAGAGAGGCATTTTGCTGAAAG
TGAAACATTAGACCAGCTCCCACTCACCAACCCTGAGCATTTTGGCACTCCAGTCATAGGAAAGAAAACA
AATAGAGGAAGAAGATCTAATCATATACCAGAGGAAGAGTCTTCATCATCCTCCAGTGATGAAGATGAGG
ATGATAGGAAACAGATTGATGAGCTACTAGGCAAAGTTGTATGTGTAGATTACATTAGTTTGGATAAAAA
GAAAGCACTGTGGTTTCCTGCATTGGTGGTTTGTCCTGATTGTAGTGATGAGATTGCTGTAAAAAAGGAC
AATATTCTTGTTCGATCTTTCAAAGATGGAAAATTTACTTCAGTTCCAAGAAAAGATGTCCATGAAATTA
CTAGTGACACTGCACCAAAGCCTGATGCTGTTTTAAAGCAAGCCTTTGAACAGGCACTTGAATTTCACAA
AAGTAGAACTATTCCTGCTAACTGGAAGACTGAATTGAAAGAAGATAGCTCTAGCAGTGAAGCAGAGGAA
GAAGAGGAGGAGGAAGATGATGAAAAAGAAAAGGAGGATAATAGCAGTGAAGAAGAAGAAGAAATAGAAC
CATTTCCAGAAGAAAGGGAGAACTTTCTTCAGCAATTGTACAAATTTATGGAAGATAGAGGTACACCTAT
TAACAAACGACCTGTACTTGGATATCGAAATTTGAATCTCTTTAAGTTATTCAGACTTGTACACAAACTT
GGAGGATTTGATAATATTGAAAGTGGAGCTGTTTGGAAACAAGTCTACCAAGATCTTGGAATCCCTGTCT
TAAATTCAGCTGCAGGATACAATGTTAAATGTGCTTATAAAAAATACTTATATGGTTTTGAGGAGTACTG
TAGATCAGCCAACATTGAATTTCAGATGGCATTGCCAGAGAAAGTTGTTAACAAGCAATGTAAGGAGTGT
GAAAATGTAAAAGAAATAAAAGTTAAGGAGGAAAATGAAACAGAGATCAAAGAAATAAAGATGGAGGAGG
AGAGGAATATAATACCAAGAGAAGAAAAGCCTATTGAGGATGAAATTGAAAGAAAAGAAAATATTAAGCC
CTCTCTGGGAAGTAAAAAGAATTTATTAGAATCTATACCTACACATTCTGATCAGGAAAAAGAAGTTAAC
ATTAAAAAACCAGAAGACAATGAAAATCTGGATGACAAAGATGATGACACAACTAGGGTAGATGAATCCC
TCAACATAAAGGTAGAAGCTGAGGAAGAAAAAGCAAAATCTGGAGATGAAACGAATAAAGAAGAAGATGA
AGATGATGAAGAAGCAGAAGAGGAGGAGGAGGAGGAAGAAGAAGAAGAGGATGAAGATGATGATGACAAC
AATGAGGAAGAGGAGTTTGAGTGCTATCCACCAGGCATGAAAGTCCAAGTGCGGTATGGACGAGGGAAAA
ATCAAAAAATGTATGAAGCTAGTATTAAAGATTCTGATGTCGAAGGTGGAGAGGTCCTTTACTTGGTGCA
TTACTGCGGATGGAATGTGAGATACGATGAATGGATTAAAGCAGATAAAATAGTAAGACCTGCTGATAAA
AATGTGCCAAAGATAAAACATCGGAAGAAAATAAAGAATAAATTAGACAAAGAAAAAGACAAAGATGAAA
AATACTCTCCAAAAAACTGTAAACTTCGGCGCTTGTCCAAACCACCATTTCAGACAAATCCATCTCCTGA
AATGGTATCCAAACTGGATCTCACTGATGCCAAAAACTCTGATACTGCTCATATTAAGTCCATAGAAATT
ACTTCGATCCTTAATGGACTTCAAGCTTCTGAAAGTTCTGCTGAAGACAGTGAGCAGGAAGATGAGAGAG
GTGCTCAAGACATGGATAATAATGGCAAAGAGGAATCTAAGATTGATCATTTGACCAACAACAGAAATGA
TCTTATTTCAAAGGAGGAACAGAACAGTTCATCTTTGCTAGAAGAAAACAAAGTTCATGCAGATTTGGTA
ATATCCAAACCAGTGTCAAAATCTCCAGAAAGATTAAGGAAAGATATAGAAGTATTATCCGAAGATACTG
ATTATGAAGAAGATGAAGTCACAAAAAAGAGAAAGGATGTCAAGAAGGACACAACAGATAAATCTTCAAA
ACCACAAATAAAACGTGGTAAAAGAAGGTATTGCAATACAGAAGAGTGTCTAAAAACTGGATCACCTGGC
AAAAAGGAAGAGAAGGCCAAGAACAAAGAATCACTTTGCATGGAAAACAGTAGCAACAGCTCTTCAGATG
AAGATGAAGAAGAAACAAAAGCAAAGATGACACCAACTAAGAAATACAATGGTTTGGAGGAAAAAAGAAA
ATCTCTACGGACAACTGGTTTCTATTCAGGATTTTCAGAAGTGGCAGAAAAAAGGATTAAACTTTTAAAT
AACTCTGATGAAAGACTTCAAAACAGCAGGGCCAAAGATCGAAAAGATGTCTGGTCAAGTATTCAGGGAC
AGTGGCCTAAAAAAACGCTGAAAGAGCTTTTTTCAGACTCTGATACTGAGGCTGCAGCTTCCCCACCGCA
TCCTGCCCCAGAGGAGGGGGTGGCAGAGGAGTCACTGCAGACTGTGGCTGAAGAGGAGAGTTGTTCACCC
AGTGTAGAACTAGAAAAACCACCTCCAGTCAATGTCGATAGTAAACCCATTGAAGAAAAAACAGTAGAGG
TCAATGACAGAAAAGCAGAATTTCCAAGTAGTGGCAGTAATTCAGTGCTAAATACCCCTCCTACTACACC
TGAATCGCCTTCATCAGTCACTGTAACAGAAGGCAGCCGGCAGCAGTCTTCTGTAACAGTATCAGAACCA
CTGGCTCCAAACCAAGAAGAGGTTCGAAGTATCAAGAGTGAAACTGATAGCACAATTGAGGTGGATAGTG
TTGCTGGGGAGCTCCAAGACCTCCAGTCTGAAGGGAATAGCTCGCCAGCAGGTTTTGATGCCAGTGTGAG
CTCAAGCAGTAGTAATCAGCCAGAACCAGAACATCCTGAAAAAGCCTGTACAGGTCAGAAAAGAGTGAAA
GATGCTCAGGGAGGAGGAAGTTCATCAAAAAAGCAGAAAAGAAGCCATAAAGCAACAGTGGTAAACAACA
AAAAGAAGGGAAAAGGCACAAATAGTAGTGATAGTGAAGAACTTTCAGCTGGTGAAAGTATAACTAAGAG
TCAGCCAGTCAAATCAGTTTCCACTGGAATGAAGTCTCATAGTACCAAATCTCCCGCAAGGACGCAGTCT
CCAGGAAAATGTGGAAAGAATGGTGATAAGGATCCTGATCTCAAGGAACCCAGTAATCGATTACCCAAAG
TTTACAAATGGAGTTTTCAGATGTCGGACCTGGAAAATATGACAAGTGCCGAACGCATCACAATTCTTCA
AGAAAAACTTCAAGAAATCAGAAAACATTATCTGTCATTAAAATCTGAAGTAGCTTCCATTGATCGGAGG
AGAAAGCGTTTAAAGAAGAAAGAGAGAGAAAGTGCTGCTACATCCTCATCCTCCTCTTCACCTTCATCCA
GTTCCATAACAGCTGCTGTTATGTTAACTTTAGCTGAACCGTCAATGTCCAGCGCATCACAAAATGGAAT
GTCAGTTGAGTGCAGGTGA

Translation (1312 aa):
MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKVGAIVEVKN
LDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKT
NRGRRSNHIPEEESSSSSSDEDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKD
NILVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSSEAEE
EEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKL
GGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALPEKVVNKQCKEC
ENVKEIKVKEENETEIKEIKMEEERNIIPREEKPIEDEIERKENIKPSLGSKKNLLESIPTHSDQEKEVN
IKKPEDNENLDDKDDDTTRVDESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDN
NEEEEFECYPPGMKVQVRYGRGKNQKMYEASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKADKIVRPADK
NVPKIKHRKKIKNKLDKEKDKDEKYSPKNCKLRRLSKPPFQTNPSPEMVSKLDLTDAKNSDTAHIKSIEI
TSILNGLQASESSAEDSEQEDERGAQDMDNNGKEESKIDHLTNNRNDLISKEEQNSSSLLEENKVHADLV
ISKPVSKSPERLRKDIEVLSEDTDYEEDEVTKKRKDVKKDTTDKSSKPQIKRGKRRYCNTEECLKTGSPG
KKEEKAKNKESLCMENSSNSSSDEDEEETKAKMTPTKKYNGLEEKRKSLRTTGFYSGFSEVAEKRIKLLN
NSDERLQNSRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAPEEGVAEESLQTVAEEESCSP
SVELEKPPPVNVDSKPIEEKTVEVNDRKAEFPSSGSNSVLNTPPTTPESPSSVTVTEGSRQQSSVTVSEP
LAPNQEEVRSIKSETDSTIEVDSVAGELQDLQSEGNSSPAGFDASVSSSSSNQPEPEHPEKACTGQKRVK
DAQGGGSSSKKQKRSHKATVVNNKKKGKGTNSSDSEELSAGESITKSQPVKSVSTGMKSHSTKSPARTQS
PGKCGKNGDKDPDLKEPSNRLPKVYKWSFQMSDLENMTSAERITILQEKLQEIRKHYLSLKSEVASIDRR
RKRLKKKERESAATSSSSSSPSSSSITAAVMLTLAEPSMSSASQNGMSVECR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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