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Report for CCDS58985.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
58985.1 |
Public |
Homo sapiens |
5 |
TNIP1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:10318](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:58985.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:10318](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 5 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 58985.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000523338.5 |
ENSP00000428243.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000523338.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000428243.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000523338](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000428243](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000518977.5 |
ENSP00000430971.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000518977.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000430971.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000518977](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000430971](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252392.2 |
NP_001239321.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252392.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239321.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252392](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239321](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239321.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001252393.2 |
NP_001239322.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001252393.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001239322.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001252393](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001239322](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001239322.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 58985.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1908 nt): ATGGAAGGGAGAGGACCGTACCGGATCTACGACCCTGGGGGCAGCGTGCCCTCAGGAGAGGCATCCGCAG CTTTTGAGCGCCTAGTGAAGGAGAATTCCCGGCTGAAGGAAAAAATGCAAGGGATAAAGATGTTAGGGGA GCTTTTGGAAGAGTCCCAGATGGAAGCGACCAGGCTCCGGCAGAAGGCAGAGGAGCTAGTGAAGGACAAC GAGCTGCTCCCACCACCTTCTCCCTCCTTGGGCTCCTTCGACCCCCTGGCTGAGCTCACAGGAAAGGACT CAAATGTCACAGCATCTCCCACAGCCCCTGCATGCCCCAGTGACAAGCCAGCACCAGTCCAGAAGCCTCC ATCCAGTGGCACCTCCTCTGAATTTGAAGTGGTCACTCCTGAGGAGCAGAATTCACCAGAGAGCAGCAGC CATGCCAATGCGATGGCGCTGGGCCCCCTGCCCCGTGAGGACGGCAACCTGATGCTGCACCTGCAGCGCC TGGAGACCACGCTGAGTGTGTGTGCCGAGGAGCCGGACCACGGCCAGCTCTTCACCCACCTGGGCCGCAT GGCCCTGGAGTTCAACCGACTGGCATCCAAGGTGCACAAGAATGAGCAGCGCACCTCCATTCTGCAGACC CTGTGTGAGCAGCTTCGGAAGGAGAACGAGGCTCTGAAGGCCAAGTTGGATAAGGGCCTGGAACAGCGGG ATCAGGCTGCCGAGAGGCTGCGGGAGGAAAATTTGGAGCTCAAGAAGTTGTTGATGAGCAATGGCAACAA AGAGGGTGCGTCTGGGCGGCCAGGCTCACCGAAGATGGAAGGGACAGGCAAGAAGGCAGTGGCTGGACAG CAGCAGGCTAGTGTGACGGCAGGTAAGGTCCCAGAGGTGGTGGCCTTGGGCGCAGCCGAGAAGAAGGTGA AGATGCTGGAGCAGCAGCGCAGTGAGCTGCTGGAAGTGAACAAGCAGTGGGACCAGCATTTCCGGTCCAT GAAGCAGCAGTATGAGCAGAAGATCACTGAGCTGCGTCAGAAGCTGGCTGATTTGCAGAAGCAGGTGACT GACCTGGAGGCCGAGCGGGAGCAGAAGCAGCGTGACTTTGACCGCAAGCTCCTCCTGGCCAAGTCCAAGA TTGAAATGGAGGAGACCGACAAGGAGCAGCTGACAGCAGAGGCCAAGGAGCTGCGCCAAAAGGTCAAGTA CCTGCAGGATCAGCTGAGCCCACTCACCCGACAGCGTGAGTACCAGGAAAAGGAGATCCAGCGGCTCAAC AAGGCCCTGGAGGAAGCACTGAGCATCCAAACCCCGCCATCATCTCCACCAACAGCATTTGGGAGCCCAG AAGGAGCAGGGGCCCTCCTAAGGAAACAGGAGCTGGTCACGCAGAATGAGTTGCTGAAACAGCAGGTGAA GATCTTCGAGGAGGACTTCCAGAGGGAGCGCAGTGATCGTGAGCGCATGAATGAGGAGAAGGAAGAGCTG AAGAAGCAAGTGGAGAAGCTGCAGGCCCAGGTCACCCTGTCAAATGCCCAGCTAAAAGCATTCAAAGATG AGGAGAAGGCAAGAGAAGCCCTCAGACAGCAGAAGAGGAAAGCAAAGGCCTCAGGAGAGCGTTACCATGT GGAGCCCCACCCAGAACATCTCTGCGGGGCCTACCCCTACGCCTACCCGCCCATGCCAGCCATGGTGCCA CACCATGGCTTCGAGGACTGGTCCCAGATCCGCTACCCCCCTCCCCCCATGGCCATGGAGCACCCGCCCC CACTCCCCAACTCGCGCCTCTTCCATCTGCCGGAATACACCTGGCGTCTACCCTGTGGAGGGGTTCGAAA TCCAAATCAGAGCTCCCAAGTGATGGACCCTCCCACAGCCAGGCCTACAGAACCAGAGCCAGCTGATCTC AGATTGCCAAGAAACTAG
Translation (635 aa): MEGRGPYRIYDPGGSVPSGEASAAFERLVKENSRLKEKMQGIKMLGELLEESQMEATRLRQKAEELVKDN ELLPPPSPSLGSFDPLAELTGKDSNVTASPTAPACPSDKPAPVQKPPSSGTSSEFEVVTPEEQNSPESSS HANAMALGPLPREDGNLMLHLQRLETTLSVCAEEPDHGQLFTHLGRMALEFNRLASKVHKNEQRTSILQT LCEQLRKENEALKAKLDKGLEQRDQAAERLREENLELKKLLMSNGNKEGASGRPGSPKMEGTGKKAVAGQ QQASVTAGKVPEVVALGAAEKKVKMLEQQRSELLEVNKQWDQHFRSMKQQYEQKITELRQKLADLQKQVT DLEAEREQKQRDFDRKLLLAKSKIEMEETDKEQLTAEAKELRQKVKYLQDQLSPLTRQREYQEKEIQRLN KALEEALSIQTPPSSPPTAFGSPEGAGALLRKQELVTQNELLKQQVKIFEEDFQRERSDRERMNEEKEEL KKQVEKLQAQVTLSNAQLKAFKDEEKAREALRQQKRKAKASGERYHVEPHPEHLCGAYPYAYPPMPAMVP HHGFEDWSQIRYPPPPMAMEHPPPLPNSRLFHLPEYTWRLPCGGVRNPNQSSQVMDPPTARPTEPEPADL RLPRN
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