NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS58865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58865.1 Public Homo sapiens 3 PEX5L 24 110 108 CCDS HistoryNCBI Gene:51555Re-query CCDS DB by CCDS ID:58865.1Re-query CCDS DB by GeneID:51555See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58865.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000465751.5 ENSP00000419348.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000465751.5Link to Ensembl Protein Viewer:ENSP00000419348.1Re-query CCDS DB by Nucleotide ID:ENST00000465751Re-query CCDS DB by Protein ID:ENSP00000419348
Original member Current member NCBI NM_001256751.2 NP_001243680.1 Accepted alive Link to Nucleotide Sequence:NM_001256751.2Link to Protein Sequence:NP_001243680.1Re-query CCDS DB by Nucleotide ID:NM_001256751Re-query CCDS DB by Protein ID:NP_001243680Link to BLAST:NP_001243680.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243680.1 602 Q8IYB4-6 602 100% 0 0

Chromosomal Locations for CCDS 58865.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 179801828 179802032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179807674 179807831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179808272 179808437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179809471 179809668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179811801 179811871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179815861 179816004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179819860 179819976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179859062 179859157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179874327 179874423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179875354 179875477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179879929 179880123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179887673 179887784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 179898142 179898246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 180036579 180036599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGTACCAGGGACACATGCAGGGAAAAGGCTCTAGGGCGGCAGATAAGGCTGTTGCCATGGTGATGAAGG
AGATACCGAGGGAGGAGTCTGCTGAAGAAAAGCCCCTCCTTACTATGACATCACAGCTGGTGAATGAGCA
ACAAGAAAGCAGACCCCTCCTGAGTCCCTCCATCGATGACTTTCTCTGTGAAACCAAATCGGAAGCAATA
GCAAGGCCAGTAACATCCAATACAGCTGTATTGACCACTGGCTTAGATCTCCTCGACCTGAGTGAACCAG
TCTCTCAAACCCAAACCAAAGCCAAGAAGTCAGAGCCCTCATCAAAAACCTCATCCCTCAAGAAAAAGGC
CGATGGATCTGACCTCATCAGCACGGATGCTGAGCAGAGAGGCCAGCCTCTCAGAGTCCCGGAGACTTCA
TCCTTAGATCTAGACATTCAAACACAACTGGAAAAATGGGACGATGTTAAGTTTCATGGAGATCGAAATA
CCAAGGGACATCCAATGGCAGAGAGAAAATCATCCTCATCTAGAACTGGATCAAAAGAGCTCTTATGGTC
CTCAGAACACAGATCTCAACCAGAACTGAGTGGTGGAAAAAGCGCCCTCAACTCTGAGTCGGCTTCAGAA
TTGGAATTAGTGGCTCCGACTCAGGCTCGACTGACCAAAGAACATCGCTGGGGAAGCGCATTACTTTCTA
GAAACCACTCCTTAGAAGAAGAGTTTGAAAGGGCAAAAGCAGCAGTGGAGTCAGATACAGAGTTTTGGGA
TAAGATGCAAGCAGAATGGGAAGAAATGGCTCGGAGGAACTGGATATCTGAGAACCAAGAAGCCCAGAAC
CAAGTAACCATCTCGGCTAGTGAGAAGGGATATTACTTTCACACTGAAAACCCCTTCAAGGACTGGCCTG
GAGCATTTGAAGAAGGCTTAAAAAGGCTGAAGGAAGGGGATCTGCCAGTCACCATCCTGTTCATGGAAGC
AGCAATTCTTCAGGACCCTGGAGATGCAGAGGCATGGCAGTTCCTCGGGATAACCCAGGCGGAGAATGAA
AATGAACAAGCAGCTATTGTCGCCCTCCAGAGGTGCTTAGAATTACAGCCCAACAACTTAAAAGCTTTGA
TGGCCTTGGCTGTGAGTTATACTAACACTGGCCATCAGCAGGATGCCTGTGACGCTCTGAAGAATTGGAT
TAAGCAAAATCCAAAGTACAAATACCTTGTGAAAAGCAAGAAGGGATCTCCAGGCCTCACCCGGCGGATG
TCTAAGTCCCCAGTTGATAGCTCTGTTCTGGAAGGGGTGAAGGAATTATATCTGGAAGCTGCCCACCAAA
ATGGAGATATGATCGACCCAGACCTGCAGACAGGTCTAGGGGTTCTGTTCCACCTGAGTGGAGAATTTAA
TAGAGCAATAGATGCATTTAACGCTGCCTTAACTGTTCGGCCAGAGGACTATTCACTATGGAACCGCCTC
GGGGCGACCTTGGCGAACGGAGACCGCAGCGAGGAAGCCGTGGAGGCCTATACGCGAGCACTGGAGATTC
AGCCAGGATTCATCCGGTCCAGATACAACCTAGGAATAAGCTGCATCAACCTGGGCGCCTACAGAGAAGC
GGTCAGCAATTTTCTCACTGCCCTCAGTTTGCAAAGAAAGAGCAGGAATCAGCAGCAAGTTCCTCATCCT
GCAATCTCTGGGAATATCTGGGCTGCCCTCAGAATTGCGCTCTCTCTGATGGACCAACCAGAACTCTTCC
AGGCGGCTAATCTTGGTGACCTGGATGTCCTCTTAAGAGCTTTCAACTTGGATCCTTGA

Translation (602 aa):
MYQGHMQGKGSRAADKAVAMVMKEIPREESAEEKPLLTMTSQLVNEQQESRPLLSPSIDDFLCETKSEAI
ARPVTSNTAVLTTGLDLLDLSEPVSQTQTKAKKSEPSSKTSSLKKKADGSDLISTDAEQRGQPLRVPETS
SLDLDIQTQLEKWDDVKFHGDRNTKGHPMAERKSSSSRTGSKELLWSSEHRSQPELSGGKSALNSESASE
LELVAPTQARLTKEHRWGSALLSRNHSLEEEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQN
QVTISASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE
NEQAAIVALQRCLELQPNNLKALMALAVSYTNTGHQQDACDALKNWIKQNPKYKYLVKSKKGSPGLTRRM
SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRL
GATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP
AISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRAFNLDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH