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Report for CCDS68172.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
68172.1 Public Homo sapiens 20 ARFRP1 24 110 108 CCDS HistoryNCBI Gene:10139Re-query CCDS DB by CCDS ID:68172.1Re-query CCDS DB by GeneID:10139See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 68172.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000607873.1 ENSP00000476756.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000607873.1Link to Ensembl Protein Viewer:ENSP00000476756.1Re-query CCDS DB by Nucleotide ID:ENST00000607873Re-query CCDS DB by Protein ID:ENSP00000476756
Original member Current member EBI ENST00000612256.4 ENSP00000484109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612256.4Link to Ensembl Protein Viewer:ENSP00000484109.1Re-query CCDS DB by Nucleotide ID:ENST00000612256Re-query CCDS DB by Protein ID:ENSP00000484109
Original member Current member NCBI NM_001267546.3 NP_001254475.1 Accepted alive Link to Nucleotide Sequence:NM_001267546.3Link to Protein Sequence:NP_001254475.1Re-query CCDS DB by Nucleotide ID:NM_001267546Re-query CCDS DB by Protein ID:NP_001254475Link to BLAST:NP_001254475.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254475.1 154 Q13795-3 154 100% 0 0

Chromosomal Locations for CCDS 68172.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63700443 63700530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63700602 63700702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63701830 63701900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63702136 63702217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63706357 63706439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63706651 63706690 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGAGTCTATCCAAAATCACCACCACCGTGGGCCTAAACATCGGCACTGTGGATGTGGGAAAGGCTCGGC
TCATGTTCTGGGACTTAGGAGGGCAGGAAGAGCTGCAGTCTTTGTGGGACAAGTATTATGCGGAGTGTCA
CGGCGTCATCTACGTCATTGACTCCACCGACGAGGAGAGGCTGGCTGAGTCCAAGCAGGCGTTTGAGAAG
GTGGTGACCAGCGAGGCGCTGTGCGGTGTCCCCGTCTTGGTGCTGGCCAACAAGCAGGATGTGGAGACGT
GCCTCTCAATCCCTGACATCAAGACGGCCTTCAGCGACTGCACCAGCAAGATCGGCAGGCGAGATTGCCT
GACCCAGGCCTGCTCGGCCCTCACAGGCAAAGGGGTGCGCGAGGGCATCGAGTGGATGGTGAAGTGTGTC
GTGCGGAATGTGCACCGGCCGCCGCGGCAGAGGGACATCACGTAG

Translation (154 aa):
MSLSKITTTVGLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEK
VVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIGRRDCLTQACSALTGKGVREGIEWMVKCV
VRNVHRPPRQRDIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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