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Report for CCDS73569.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73569.1 Public Homo sapiens 13 RUBCNL 24 110 108 CCDS HistoryNCBI Gene:80183Re-query CCDS DB by CCDS ID:73569.1Re-query CCDS DB by GeneID:80183See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73569.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378797.6 ENSP00000368074.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378797.6Link to Ensembl Protein Viewer:ENSP00000368074.3Re-query CCDS DB by Nucleotide ID:ENST00000378797Re-query CCDS DB by Protein ID:ENSP00000368074
Original member Current member EBI ENST00000675992.1 ENSP00000502396.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675992.1Link to Ensembl Protein Viewer:ENSP00000502396.1Re-query CCDS DB by Nucleotide ID:ENST00000675992Re-query CCDS DB by Protein ID:ENSP00000502396
Original member Current member NCBI NM_001286766.3 NP_001273695.1 Accepted alive Link to Nucleotide Sequence:NM_001286766.3Link to Protein Sequence:NP_001273695.1Re-query CCDS DB by Nucleotide ID:NM_001286766Re-query CCDS DB by Protein ID:NP_001273695Link to BLAST:NP_001273695.1

Chromosomal Locations for CCDS 73569.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 46343385 46343497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46344741 46344831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46345447 46345600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46349286 46349347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46350113 46350351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46356432 46356496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46359486 46359631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46361441 46361573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46362538 46362598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46363115 46363213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 46368042 46368222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGATTATATCAGCAATGGAGAAAATGAAGTGTAACATTCTGAGTCAACAGCAGACAGAGAGCTGGAGTA
AAGAAGTCAGTGGGTTACTTGGGAGTGATCAGCCTGACTCTGAAATGACTTTTGATACCAACATAAAGCA
AGAGTCTGGGTCTTCTACTTCTTCATACAGTGGCTATGAAGGTTGTGCTGTGTTACAGGTCAGCCCAGTG
ACTGAAACACGTACTTACCATGATGTGAAAGAGATTTGCAAATGCGATGTTGATGAATTTGTTATTTTAG
AGCTTGGAGATTTTAATGATATCACAGAAACCTGTAGCTGTTCCTGCAGCTCCTCTAAGAGTGTCACTTA
TGAGCCAGACTTCAATTCTGCAGAACTATTAGCCAAAGAGCTGTACCGCGTGTTCCAGAAGTGCTGGATA
CTGTCAGTAGTTAATTCTCAGCTGGCAGGTTCCCTGAGTGCAGCTGGCTCGATAGTCGTAAATGAAGAGT
GTGTCCGAAAAGACTTTGAATCCAGTATGAATGTAGTACAGGAAATTAAATTTAAGTCTAGGATCAGAGG
GACTGAAGACTGGGCTCCTCCTAGATTTCAAATCATATTTAATATTCATCCACCACTCAAGAGGGACCTT
GTGGTGGCAGCCCAGAATTTTTTCTGTGCCGGCTGTGGAACTCCAGTAGAGCCTAAGTTTGTGAAGCGGC
TCCGGTACTGCGAATACCTAGGGAAGTATTTCTGTGACTGCTGCCACTCATATGCAGAGTCGTGCATCCC
TGCCCGAATCCTGATGATGTGGGACTTCAAGAAGTACTACGTCAGCAATTTCTCCAAACAGCTGCTCGAC
AGCATATGGCACCAGCCCATTTTCAATTTGCTGAGCATCGGCCAAAGCCTGTATGCGAAAGCCAAGGAGC
TGGACAGAGTGAAGGAAATTCAGGAGCAGCTCTTCCATATCAAGAAGCTGTTGAAGACCTGTAGGTTTGC
TAACAGTGCATTAAAGGAGTTCGAGCAGGTGCCGGGACACTTGACTGATGAGCTCCACCTGTTCTCCCTT
GAGGACCTGGTCAGGATCAAGAAAGGGCTGCTGGCACCCTTACTCAAGGACATTCTGAAAGCTTCCCTTG
CACATGTGGCTGGCTGTGAGCTGTGTCAAGGAAAGGGCTTTATTTGTGAATTTTGCCAGAATACGACTGT
CATCTTCCCATTTCAGACAGCAACATGTAGAAGATGTTCAGCGTGCAGGGCTTGCTTTCACAAACAGTGC
TTCCAGTCCTCCGAGTGCCCCCGGTGTGCGAGGATCACAGCGAGGAGAAAACTTCTGGAAAGTGTGGCCT
CTGCAGCAACATGA

Translation (447 aa):
MIISAMEKMKCNILSQQQTESWSKEVSGLLGSDQPDSEMTFDTNIKQESGSSTSSYSGYEGCAVLQVSPV
TETRTYHDVKEICKCDVDEFVILELGDFNDITETCSCSCSSSKSVTYEPDFNSAELLAKELYRVFQKCWI
LSVVNSQLAGSLSAAGSIVVNEECVRKDFESSMNVVQEIKFKSRIRGTEDWAPPRFQIIFNIHPPLKRDL
VVAAQNFFCAGCGTPVEPKFVKRLRYCEYLGKYFCDCCHSYAESCIPARILMMWDFKKYYVSNFSKQLLD
SIWHQPIFNLLSIGQSLYAKAKELDRVKEIQEQLFHIKKLLKTCRFANSALKEFEQVPGHLTDELHLFSL
EDLVRIKKGLLAPLLKDILKASLAHVAGCELCQGKGFICEFCQNTTVIFPFQTATCRRCSACRACFHKQC
FQSSECPRCARITARRKLLESVASAAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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