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Report for CCDS6961.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6961.1 Public Homo sapiens 9 OBP2B 24 110 108 CCDS HistoryNCBI Gene:29989Re-query CCDS DB by CCDS ID:6961.1Re-query CCDS DB by GeneID:29989See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6961.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372034.8 ENSP00000361104.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372034.8Link to Ensembl Protein Viewer:ENSP00000361104.3Re-query CCDS DB by Nucleotide ID:ENST00000372034Re-query CCDS DB by Protein ID:ENSP00000361104
Original member Current member EBI ENST00000618116.4 ENSP00000484615.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618116.4Link to Ensembl Protein Viewer:ENSP00000484615.1Re-query CCDS DB by Nucleotide ID:ENST00000618116Re-query CCDS DB by Protein ID:ENSP00000484615
Original member Current member NCBI NM_001288987.2 NP_001275916.1 Accepted alive Link to Nucleotide Sequence:NM_001288987.2Link to Protein Sequence:NP_001275916.1Re-query CCDS DB by Nucleotide ID:NM_001288987Re-query CCDS DB by Protein ID:NP_001275916Link to BLAST:NP_001275916.1
Original member Current member NCBI NM_014581.4 NP_055396.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014581.4Link to Protein Sequence:NP_055396.1Re-query CCDS DB by Nucleotide ID:NM_014581Re-query CCDS DB by Protein ID:NP_055396Link to BLAST:NP_055396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001275916.1 170 Q9NPH6-1 170 100% 0 0
NP_055396.1 170 Q9NPH6-1 170 100% 0 0

Chromosomal Locations for CCDS 6961.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133205918 133205940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133206315 133206416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133207226 133207336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133208133 133208203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133208469 133208602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133209128 133209199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (513 nt):
ATGAAGACCCTGTTCCTGGGTGTCACGCTCGGCCTGGCCGCTGCCCTGTCCTTCACCCTGGAGGAGGAGG
ATATCACAGGGACCTGGTACGTGAAGGCCATGGTGGTCGATAAGGACTTTCCGGAGGACAGGAGGCCCAG
GAAGGTGTCCCCAGTGAAGGTGACAGCCCTGGGCGGTGGGAAGTTGGAAGCCACGTTCACCTTCATGAGG
GAGGATAGGTGCATCCAGAAGAAAATCCTGATGCGGAAGACGGAGGAGCCTGGCAAATACAGCGCCTATG
GGGGCAGGAAGCTCATGTACCTGCAGGAGCTGCCCAGGAGGGACCACTACATCTTTTACTGCAAAGACCA
GCACCATGGGGGCCTGCTCCACATGGGAAAGCTTGTGGGTAGGAATTCTGATACCAACCGGGAGGCCCTG
GAAGAATTTAAGAAATTGGTGCAGCGCAAGGGACTCTCGGAGGAGGACATTTTCACGCCCCTGCAGACGG
GAAGCTGCGTTCCCGAACACTAG

Translation (170 aa):
MKTLFLGVTLGLAAALSFTLEEEDITGTWYVKAMVVDKDFPEDRRPRKVSPVKVTALGGGKLEATFTFMR
EDRCIQKKILMRKTEEPGKYSAYGGRKLMYLQELPRRDHYIFYCKDQHHGGLLHMGKLVGRNSDTNREAL
EEFKKLVQRKGLSEEDIFTPLQTGSCVPEH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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