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Report for CCDS69882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
69882.1 Public Mus musculus 1 Mgat4a 23 108 98 CCDS HistoryNCBI Gene:269181Re-query CCDS DB by CCDS ID:69882.1Re-query CCDS DB by GeneID:269181See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 69882.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154819.7 ENSMUSP00000121181.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154819.7Link to Ensembl Protein Viewer:ENSMUSP00000121181.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154819Re-query CCDS DB by Protein ID:ENSMUSP00000121181
Original member Current member NCBI NM_001290801.1 NP_001277730.1 Accepted alive Link to Nucleotide Sequence:NM_001290801.1Link to Protein Sequence:NP_001277730.1Re-query CCDS DB by Nucleotide ID:NM_001290801Re-query CCDS DB by Protein ID:NP_001277730Link to BLAST:NP_001277730.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277730.1 526 Q812G0-2 526 100% 0 0

Chromosomal Locations for CCDS 69882.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37444659 37444685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37444807 37444919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37449096 37449162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37450329 37450407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37452231 37452424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37452522 37452629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37454744 37454874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37456590 37456704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37462892 37462967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37464421 37464534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37466537 37466583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37490260 37490393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37495873 37496013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37498600 37498740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37536039 37536132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGAGGCTCCGAAATGGAACTGTGGCCACTGCGCTGGTATTTGTCACGTCCTTCCTTACCCTATCCTGGT
ATACCACGTGGCAAAATGGGAAAGAAAAACTAATTGCTTATCAACGAGAATTCCTTGCTCTAAAAGAGCG
TCTTCGAGTGGCCGAGCATAGGATATCTCAGCGCTCCTCGGAGCTAAACACCATTGTCCAGCAGTTCCGC
AGAGCTGGAGCAGAGACTAATGGAAATAATACCATAAAGCTTCTAAAAGAGTTGACAAGCAAAAAATCAC
TTCGAGTGCCAAGTATTTATTATCATTTGCCTCATCTATTGCAAAATGAAAGAAGCCTTCAGCCCGCCGT
ACAGATTGGCAGTGGAAGAACGGGAGTTTCAATAGTTATGGGAATTCCTACTGTGAAGAGAGAAGTTAAA
TCTTACCTCGTAGAAACCCTTCACTCCCTTATTGATAATCTGTATCCTGAAGAGAAGCTGGACTGTGTTA
TAGTCGTCTTCATAGGAGAGACAGATCTTGATTATGTTCACAGCGTTGTTGCCAACCTGGAGAAAGAATT
TTCTAGAGAAATTAGTTCTGGCCTGCTGGAAATAATCTCTCCTCCTGAAAGCTATTACCCCGACTTGACA
AACCTGAAGGAGACGTTCGGAGACTCCAAGGAAAGAGTGAGATGGAGAACCAAGCAAAACCTGGATTACT
GTTTTCTGATGATGTATGCTCAGGAGAAGGGCATCTACTACATTCAGCTTGAAGACGATATTATTGTCAA
ACAAAACTATTTTAATACCATAAAGAATTTTGCACTTCAACTTTCTTCGGAAGAATGGATGATTCTAGAG
TTTTCCCAGCTTGGCTTCATTGGAAAAATGTTCCAGGCGCCGGACCTGGCGCTGGTCGTGGAGTTCATCC
TCATGTTCTATAAGGAGAAGCCCATTGACTGGCTGCTGGACCACATTCTCTGGGTGAAGGTCTGCAACCC
CGAAAAAGATGCTAAACACTGCGACAGACAGAAGGCAAACCTACGAATCCGCTTCCGACCCTCCCTCTTC
CAGCACGTGGGCCTACACTCGTCTCTGTCGGGGAAGATTCAGAAACTCACGGATAAAGATTACATGAAGC
CATTGCTTCTCAAGGTCCACGTGAACCCGCCTGCAGAGGTCTCCACCTCCCTGAAGGTGTACCAAGGGCA
CACCCTGGAGAAGACCTACATGGGGGAAGACTTCTTTTGGGCCATCACCCCCACGGCTGGAGACTACATC
TTGTTTAAATTTGACAAACCGGTCAACGTGGAGAGTTATTTGTTCCACAGCGGCAATCAAGAGCACCCAG
GAGACATCCTGCTGAACACGACCGTGGATGTTCTCCCTCTTAAGAGCGACAGTTTGGAAATCAGCAAAGA
AACCAAAGACAAACGATTAGAAGATGGCTATTTCAGAATAGGAAAATTTGAGTATGGTGTTGCAGAGGGA
ATTGTGGATCCTGGTCTAAACCCTATTTCAGCCTTTCGACTTTCCGTTATTCAGAACTCAGCTGTTTGGG
CCATTCTTAATGAGATTCATATTAAAAAAGTCACCAGTTGA

Translation (526 aa):
MRLRNGTVATALVFVTSFLTLSWYTTWQNGKEKLIAYQREFLALKERLRVAEHRISQRSSELNTIVQQFR
RAGAETNGNNTIKLLKELTSKKSLRVPSIYYHLPHLLQNERSLQPAVQIGSGRTGVSIVMGIPTVKREVK
SYLVETLHSLIDNLYPEEKLDCVIVVFIGETDLDYVHSVVANLEKEFSREISSGLLEIISPPESYYPDLT
NLKETFGDSKERVRWRTKQNLDYCFLMMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILE
FSQLGFIGKMFQAPDLALVVEFILMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLF
QHVGLHSSLSGKIQKLTDKDYMKPLLLKVHVNPPAEVSTSLKVYQGHTLEKTYMGEDFFWAITPTAGDYI
LFKFDKPVNVESYLFHSGNQEHPGDILLNTTVDVLPLKSDSLEISKETKDKRLEDGYFRIGKFEYGVAEG
IVDPGLNPISAFRLSVIQNSAVWAILNEIHIKKVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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