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Report for CCDS78322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78322.1 Public Homo sapiens 8 TRIM35 24 110 108 CCDS HistoryNCBI Gene:23087Re-query CCDS DB by CCDS ID:78322.1Re-query CCDS DB by GeneID:23087See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78322.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000521253.1 ENSP00000428770.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000521253.1Link to Ensembl Protein Viewer:ENSP00000428770.1Re-query CCDS DB by Nucleotide ID:ENST00000521253Re-query CCDS DB by Protein ID:ENSP00000428770
Original member Current member NCBI NM_001304495.2 NP_001291424.1 Accepted alive Link to Nucleotide Sequence:NM_001304495.2Link to Protein Sequence:NP_001291424.1Re-query CCDS DB by Nucleotide ID:NM_001304495Re-query CCDS DB by Protein ID:NP_001291424Link to BLAST:NP_001291424.1

Chromosomal Locations for CCDS 78322.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 27288112 27288127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27289162 27289280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27294080 27294310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 27310801 27311235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGAGCGGAGTCCCGACGTGTCCCCCGGGCCTTCCCGCTCCTTCAAGGAGGAGTTGCTCTGCGCCGTCT
GCTACGACCCCTTCCGCGACGCAGTCACTCTGCGCTGCGGCCACAACTTCTGCCGCGGGTGCGTGAGCCG
CTGCTGGGAGGTGCAGGTGTCGCCCACCTGCCCAGTGTGCAAAGACCGCGCGTCACCCGCCGACCTGCGC
ACCAACCACACCCTCAACAACCTGGTGGAGAAGCTGCTGCGCGAGGAGGCCGAGGGCGCGCGCTGGACCA
GCTACCGCTTCTCGCGTGTCTGCCGCCTGCACCGCGGACAGCTCAGCCTCTTCTGCCTCGAGGACAAGGA
GCTGCTGTGCTGCTCCTGCCAGGCCGACCCCCGACACCAGGGGCACCGCGTGCAGCCGGTGAAGGACACT
GCCCACGACTTTCGGGTGGAGGCTGCATGGCTGGAAGGCCGGATCCGGCAGGAGTTTGATAAGCTTCGCG
AGTTCTTGAGAGTGGAGGAGCAGGCCATTCTGGATGCCATGGCCGAGGAGACAAGGCAGAAGCAACTTCT
GGCCGACGAGAAGATGAAGCAGCTCACAGAGGAGACGGAGGTGCTGGCACATGAGATCGAGCGGCTGCAG
ATGGAGATGAAGGAGGACGACGTTTCTTTTCTCATGACTCTTCTGCACCATGGAGCCAGAGCCAGTCCAG
CCCGGCATGCTTATCGATGTCTGCAAGTACCTGGGCTCCCTGCAGTACCGCGTCTGGAAGAAGATGCTTG
CATCTGTGGAATCTGTACCCTTCAGCTTTGA

Translation (266 aa):
MERSPDVSPGPSRSFKEELLCAVCYDPFRDAVTLRCGHNFCRGCVSRCWEVQVSPTCPVCKDRASPADLR
TNHTLNNLVEKLLREEAEGARWTSYRFSRVCRLHRGQLSLFCLEDKELLCCSCQADPRHQGHRVQPVKDT
AHDFRVEAAWLEGRIRQEFDKLREFLRVEEQAILDAMAEETRQKQLLADEKMKQLTEETEVLAHEIERLQ
MEMKEDDVSFLMTLLHHGARASPARHAYRCLQVPGLPAVPRLEEDACICGICTLQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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