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Report for CCDS13072.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13072.1 Public Homo sapiens 20 PANK2 24 110 108 CCDS HistoryNCBI Gene:80025Re-query CCDS DB by CCDS ID:13072.1Re-query CCDS DB by GeneID:80025See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13072.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000497424.5 ENSP00000417609.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000497424.5Link to Ensembl Protein Viewer:ENSP00000417609.1Re-query CCDS DB by Nucleotide ID:ENST00000497424Re-query CCDS DB by Protein ID:ENSP00000417609
Original member Current member EBI ENST00000621507.1 ENSP00000481523.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621507.1Link to Ensembl Protein Viewer:ENSP00000481523.1Re-query CCDS DB by Nucleotide ID:ENST00000621507Re-query CCDS DB by Protein ID:ENSP00000481523
Original member Current member NCBI NM_001324191.2 NP_001311120.1 Accepted alive Link to Nucleotide Sequence:NM_001324191.2Link to Protein Sequence:NP_001311120.1Re-query CCDS DB by Nucleotide ID:NM_001324191Re-query CCDS DB by Protein ID:NP_001311120Link to BLAST:NP_001311120.1
Original member Current member NCBI NM_024960.6 NP_079236.3 Accepted alive Link to Nucleotide Sequence:NM_024960.6Link to Protein Sequence:NP_079236.3Re-query CCDS DB by Nucleotide ID:NM_024960Re-query CCDS DB by Protein ID:NP_079236Link to BLAST:NP_079236.3
Original member Current member NCBI NM_153640.4 NP_705904.1 Accepted alive Link to Nucleotide Sequence:NM_153640.4Link to Protein Sequence:NP_705904.1Re-query CCDS DB by Nucleotide ID:NM_153640Re-query CCDS DB by Protein ID:NP_705904Link to BLAST:NP_705904.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311120.1 279 Q9BZ23-2 279 100% 0 0
NP_079236.3 279 Q9BZ23-2 279 100% 0 0
NP_705904.1 279 Q9BZ23-2 279 100% 0 0

Chromosomal Locations for CCDS 13072.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 3908171 3908278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3910577 3910830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3912458 3912634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3916927 3917050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3918671 3918796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 3923244 3923294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (840 nt):
ATGCCTGCTTTTATTCAAATGGGCAGAGATAAAAACTTCTCGAGTCTCCACACTGTCTTTTGTGCCACTG
GAGGTGGAGCGTACAAATTTGAGCAGGATTTTCTCACAATAGGTGATCTTCAGCTTTGCAAACTGGATGA
ACTAGATTGCTTGATCAAAGGAATTTTATACATTGACTCAGTCGGATTCAATGGACGGTCACAGTGCTAT
TACTTTGAAAACCCTGCTGATTCTGAAAAGTGTCAGAAGTTACCATTTGATTTGAAAAATCCGTATCCTC
TGCTTCTGGTGAACATTGGCTCAGGGGTTAGCATCTTAGCAGTATATTCCAAAGATAATTACAAACGGGT
CACAGGTACTAGTCTTGGAGGAGGAACTTTTTTTGGTCTCTGCTGTCTTCTTACTGGCTGTACCACTTTT
GAAGAAGCTCTTGAAATGGCATCTCGTGGAGATAGCACCAAAGTGGATAAACTAGTACGAGATATTTATG
GAGGGGACTATGAGAGGTTTGGACTGCCAGGCTGGGCTGTGGCTTCAAGCTTTGGAAACATGATGAGCAA
GGAGAAGCGAGAGGCTGTCAGTAAAGAGGACCTGGCCAGAGCGACTTTGATCACCATCACCAACAACATT
GGCTCAATAGCAAGAATGTGTGCCCTTAATGAAAACATTAACCAGGTGGTATTTGTTGGAAATTTCTTGA
GAATTAATACGATCGCCATGCGGCTTTTGGCATATGCTTTGGATTATTGGTCCAAGGGGCAGTTGAAAGC
ACTTTTTTCGGAACACGAGGGTTATTTTGGAGCTGTTGGAGCACTCCTTGAGCTGTTGAAGATCCCGTGA

Translation (279 aa):
MPAFIQMGRDKNFSSLHTVFCATGGGAYKFEQDFLTIGDLQLCKLDELDCLIKGILYIDSVGFNGRSQCY
YFENPADSEKCQKLPFDLKNPYPLLLVNIGSGVSILAVYSKDNYKRVTGTSLGGGTFFGLCCLLTGCTTF
EEALEMASRGDSTKVDKLVRDIYGGDYERFGLPGWAVASSFGNMMSKEKREAVSKEDLARATLITITNNI
GSIARMCALNENINQVVFVGNFLRINTIAMRLLAYALDYWSKGQLKALFSEHEGYFGAVGALLELLKIP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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