NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81726.1 Public Homo sapiens 12 SCYL2 24 110 108 CCDS HistoryNCBI Gene:55681Re-query CCDS DB by CCDS ID:81726.1Re-query CCDS DB by GeneID:55681See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81726.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000635101.1 ENSP00000489123.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000635101.1Link to Ensembl Protein Viewer:ENSP00000489123.1Re-query CCDS DB by Nucleotide ID:ENST00000635101Re-query CCDS DB by Protein ID:ENSP00000489123
Original member Current member NCBI NM_001330253.2 NP_001317182.1 Accepted alive Link to Nucleotide Sequence:NM_001330253.2Link to Protein Sequence:NP_001317182.1Re-query CCDS DB by Nucleotide ID:NM_001330253Re-query CCDS DB by Protein ID:NP_001317182Link to BLAST:NP_001317182.1
Original member Current member NCBI NM_001330254.2 NP_001317183.1 Accepted alive Link to Nucleotide Sequence:NM_001330254.2Link to Protein Sequence:NP_001317183.1Re-query CCDS DB by Nucleotide ID:NM_001330254Re-query CCDS DB by Protein ID:NP_001317183Link to BLAST:NP_001317183.1

Chromosomal Locations for CCDS 81726.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100282971 100283147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100291503 100291660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100298031 100298175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100311044 100311193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100312432 100312653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100313422 100313538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100314489 100314614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100315558 100315734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100317681 100317692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100317803 100317925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100323525 100323638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100326622 100326754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100329201 100329319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100334166 100334266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100335625 100335691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100335811 100335906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100337387 100337506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100338528 100339172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2802 nt):
ATGGAGTCCATGCTTAATAAATTGAAGAGTACTGTTACAAAAGTAACAGCTGATGTCACTAGTGCTGTAA
TGGGAAATCCTGTCACTAGAGAATTTGATGTTGGTCGACACATTGCCAGTGGTGGCAATGGGCTAGCTTG
GAAGATTTTTAATGGCACAAAAAAGTCAACAAAGCAGGAAGTGGCAGTTTTTGTCTTTGATAAAAAACTG
ATTGACAAGTATCAAAAATTTGAAAAGGATCAAATCATTGATTCTCTAAAACGAGGAGTCCAACAGTTAA
CTCGGCTTCGACACCCTCGACTTCTTACTGTCCAGCATCCTTTAGAAGAATCCAGGGATTGCTTGGCATT
TTGTACAGAACCAGTTTTTGCCAGTTTAGCCAATGTTCTTGGTAACTGGGAAAATCTACCTTCCCCTATA
TCTCCAGACATTAAGGATTATAAACTTTATGATGTAGAAACCAAATATGGTTTGCTTCAGGTTTCTGAAG
GATTGTCATTCTTGCATAGCAGTGTGAAAATGGTGCATGGAAATATCACTCCTGAAAATATAATTTTGAA
TAAAAGTGGAGCCTGGAAAATAATGGGTTTTGATTTTTGTGTATCATCAACCAATCCTTCTGAACAAGAG
CCTAAATTTCCTTGTAAAGAATGGGACCCAAATTTACCTTCATTGTGTCTTCCAAATCCTGAATATTTGG
CTCCTGAATACATACTTTCTGTGAGCTGTGAAACAGCCAGTGATATGTATTCTTTAGGAACTGTTATGTA
TGCTGTATTTAATAAAGGGAAACCTATATTTGAAGTCAACAAGCAAGATATTTACAAGAGTTTCAGTAGG
CAGTTGGATCAGTTGAGTCGTTTAGGATCTAGTTCACTTACAAATATACCTGAGGAAGTTCGTGAACATG
TAAAGCTACTGTTAAATGTAACTCCGACTGTAAGACCAGATGCAGATCAAATGACAAAGATTCCCTTCTT
TGATGATGTTGGTGCAGTAACACTGCAATATTTTGATACCTTATTCCAAAGAGATAATCTTCAGAAATCA
CAGTTTTTCAAAGGACTGCCAAAGGTTCTACCAAAACTGCCCAAGCGTGTCATTGTGCAGAGAATTTTGC
CTTGTTTGACTTCAGAATTTGTAAACCCTGACATGGTACCTTTTGTTTTGCCCAATGTTCTACTTATTGC
TGAGGAATGCACCAAAGAAGAATATGTCAAATTAATTCTTCCTGAACTTGGCCCTGTGTTTAAGCAGCAG
GAGCCAATCCAGGCTAGCAACATGATTTTGTTAATTTTCCTACAAAAAATGGATTTGCTACTAACCAAAA
CCCCTCCTGATGAGATAAAGAACAGTGTTCTACCCATGGTTTACAGAGCACTAGAAGCTCCTTCCATTCA
GATCCAGGAGCTCTGTCTAAACATCATTCCAACCTTTGCAAATCTTATAGACTACCCATCCATGAAAAAC
GCTTTGATACCAAGAATTAAAAATGCTTGTCTACAAACATCTTCCCTTGCGGTTCGTGTAAATTCATTAG
TGTGCTTAGGAAAGATTTTGGAATACTTGGATAAGTGGTTTGTACTTGATGATATCCTACCCTTCTTACA
ACAAATTCCATCCAAGGAACCTGCGGTCCTCATGGGAATTTTAGGTATTTACAAATGTACTTTTACTCAT
AAGAAGTTGGGAATCACCAAAGAGCAGCTGGCCGGAAAAGTGTTGCCTCATCTTATTCCCCTGAGTATTG
AAAACAATCTTAATCTTAATCAGTTCAATTCTTTCATTTCCGTCATAAAAGAAATGCTTAATAGATTGGA
GTCTGAACATAAGACTAAACTGGAGCAACTTCATATAATGCAAGAACAGCAGAAATCTTTGGATATAGGA
AATCAAATGAATGTTTCTGAGGAGATGAAAGTTACAAATATTGGGAATCAGCAAATTGACAAAGTTTTTA
ACAACATTGGAGCAGACCTTCTGACTGGCAGTGAGTCCGAAAATAAAGAGGACGGGTTACAGAATAAACA
TAAAAGAGCATCACTTACACTTGAAGAAAAACAAAAATTAGCAAAAGAACAAGAGCAGGCACAGAAGCTG
AAAAGCCAGCAGCCTCTTAAACCCCAAGTGCACACACCTGTTGCTACTGTTAAACAGACTAAGGACTTGA
CAGACACACTGATGGATAATATGTCATCCTTGACCAGCCTTTCTGTTAGTACCCCTAAATCTTCTGCTTC
AAGTACTTTCACTTCTGTTCCTTCCATGGGCATTGGTATGATGTTTTCTACACCAACTGATAATACAAAG
AGAAATTTGACAAATGGCCTAAATGCCAATATGGGCTTTCAGACTTCAGGATTCAACATGCCCGTTAATA
CAAACCAGAACTTCTACAGTAGTCCAAGCACAGTTGGAGTGACCAAGATGACTCTGGGAACACCTCCCAC
TTTGCCAAACTTCAATGCTTTGAGTGTTCCTCCTGCTGGTGCAAAGCAGACCCAACAAAGACCCACAGAT
ATGTCTGCCCTTAATAATCTCTTTGGCCCTCAGAAACCCAAAGTTAGCATGAACCAGTTATCACAACAGA
AACCAAATCAGTGGCTTAATCAGTTTGTACCTCCTCAAGGTTCTCCAACTATGGGCAGTTCAGTAATGGG
GACACAGATGAACGTGATAGGACAATCTGCTTTTGGTATGCAGGGTAATCCTTTCTTTAACCCACAGAAC
TTTGCACAGCCACCAACTACTATGACCAATAGCAGTTCAGCTAGCAATGATTTAAAAGATCTTTTTGGGT
GA

Translation (933 aa):
MESMLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKL
IDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSPI
SPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQE
PKFPCKEWDPNLPSLCLPNPEYLAPEYILSVSCETASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSR
QLDQLSRLGSSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKS
QFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQ
EPIQASNMILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKN
ALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTH
KKLGITKEQLAGKVLPHLIPLSIENNLNLNQFNSFISVIKEMLNRLESEHKTKLEQLHIMQEQQKSLDIG
NQMNVSEEMKVTNIGNQQIDKVFNNIGADLLTGSESENKEDGLQNKHKRASLTLEEKQKLAKEQEQAQKL
KSQQPLKPQVHTPVATVKQTKDLTDTLMDNMSSLTSLSVSTPKSSASSTFTSVPSMGIGMMFSTPTDNTK
RNLTNGLNANMGFQTSGFNMPVNTNQNFYSSPSTVGVTKMTLGTPPTLPNFNALSVPPAGAKQTQQRPTD
MSALNNLFGPQKPKVSMNQLSQQKPNQWLNQFVPPQGSPTMGSSVMGTQMNVIGQSAFGMQGNPFFNPQN
FAQPPTTMTNSSSASNDLKDLFG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH