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Report for CCDS5419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5419.1 Public Homo sapiens 7 CPVL 24 110 108 CCDS HistoryNCBI Gene:54504Re-query CCDS DB by CCDS ID:5419.1Re-query CCDS DB by GeneID:54504See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5419.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265394.10 ENSP00000265394.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265394.10Link to Ensembl Protein Viewer:ENSP00000265394.5Re-query CCDS DB by Nucleotide ID:ENST00000265394Re-query CCDS DB by Protein ID:ENSP00000265394
Original member Current member EBI ENST00000396276.7 ENSP00000379572.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396276.7Link to Ensembl Protein Viewer:ENSP00000379572.3Re-query CCDS DB by Nucleotide ID:ENST00000396276Re-query CCDS DB by Protein ID:ENSP00000379572
Original member Current member EBI ENST00000409850.5 ENSP00000387164.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409850.5Link to Ensembl Protein Viewer:ENSP00000387164.1Re-query CCDS DB by Nucleotide ID:ENST00000409850Re-query CCDS DB by Protein ID:ENSP00000387164
Original member Current member NCBI NM_001348052.1 NP_001334981.1 Accepted alive Link to Nucleotide Sequence:NM_001348052.1Link to Protein Sequence:NP_001334981.1Re-query CCDS DB by Nucleotide ID:NM_001348052Re-query CCDS DB by Protein ID:NP_001334981Link to BLAST:NP_001334981.1
Original member Current member NCBI NM_001348054.1 NP_001334983.1 Accepted alive Link to Nucleotide Sequence:NM_001348054.1Link to Protein Sequence:NP_001334983.1Re-query CCDS DB by Nucleotide ID:NM_001348054Re-query CCDS DB by Protein ID:NP_001334983Link to BLAST:NP_001334983.1
Original member Current member NCBI NM_001371255.1 NP_001358184.1 Accepted alive Link to Nucleotide Sequence:NM_001371255.1Link to Protein Sequence:NP_001358184.1Re-query CCDS DB by Nucleotide ID:NM_001371255Re-query CCDS DB by Protein ID:NP_001358184Link to BLAST:NP_001358184.1
Original member Current member NCBI NM_001371256.1 NP_001358185.1 Accepted alive Link to Nucleotide Sequence:NM_001371256.1Link to Protein Sequence:NP_001358185.1Re-query CCDS DB by Nucleotide ID:NM_001371256Re-query CCDS DB by Protein ID:NP_001358185Link to BLAST:NP_001358185.1
Original member Current member NCBI NM_001371257.1 NP_001358186.1 Accepted alive Link to Nucleotide Sequence:NM_001371257.1Link to Protein Sequence:NP_001358186.1Re-query CCDS DB by Nucleotide ID:NM_001371257Re-query CCDS DB by Protein ID:NP_001358186Link to BLAST:NP_001358186.1
Original member Current member NCBI NM_001371258.1 NP_001358187.1 Accepted alive Link to Nucleotide Sequence:NM_001371258.1Link to Protein Sequence:NP_001358187.1Re-query CCDS DB by Nucleotide ID:NM_001371258Re-query CCDS DB by Protein ID:NP_001358187Link to BLAST:NP_001358187.1
Original member Current member NCBI NM_001371260.1 NP_001358189.1 Accepted alive Link to Nucleotide Sequence:NM_001371260.1Link to Protein Sequence:NP_001358189.1Re-query CCDS DB by Nucleotide ID:NM_001371260Re-query CCDS DB by Protein ID:NP_001358189Link to BLAST:NP_001358189.1
Original member Current member NCBI NM_001371261.1 NP_001358190.1 Accepted alive Link to Nucleotide Sequence:NM_001371261.1Link to Protein Sequence:NP_001358190.1Re-query CCDS DB by Nucleotide ID:NM_001371261Re-query CCDS DB by Protein ID:NP_001358190Link to BLAST:NP_001358190.1
Original member Current member NCBI NM_001371262.1 NP_001358191.1 Accepted alive Link to Nucleotide Sequence:NM_001371262.1Link to Protein Sequence:NP_001358191.1Re-query CCDS DB by Nucleotide ID:NM_001371262Re-query CCDS DB by Protein ID:NP_001358191Link to BLAST:NP_001358191.1
Original member Current member NCBI NM_001371263.1 NP_001358192.1 Accepted alive Link to Nucleotide Sequence:NM_001371263.1Link to Protein Sequence:NP_001358192.1Re-query CCDS DB by Nucleotide ID:NM_001371263Re-query CCDS DB by Protein ID:NP_001358192Link to BLAST:NP_001358192.1
Original member Current member NCBI NM_019029.3 NP_061902.2 Accepted alive Link to Nucleotide Sequence:NM_019029.3Link to Protein Sequence:NP_061902.2Re-query CCDS DB by Nucleotide ID:NM_019029Re-query CCDS DB by Protein ID:NP_061902Link to BLAST:NP_061902.2
Original member Current member NCBI NM_031311.5 NP_112601.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031311.5Link to Protein Sequence:NP_112601.3Re-query CCDS DB by Nucleotide ID:NM_031311Re-query CCDS DB by Protein ID:NP_112601Link to BLAST:NP_112601.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334981.1 476 Q9H3G5 476 100% 0 0
NP_001334983.1 476 Q9H3G5 476 100% 0 0
NP_001358184.1 476 Q9H3G5 476 100% 0 0
NP_001358185.1 476 Q9H3G5 476 100% 0 0
NP_001358186.1 476 Q9H3G5 476 100% 0 0
NP_001358187.1 476 Q9H3G5 476 100% 0 0
NP_001358189.1 476 Q9H3G5 476 100% 0 0
NP_001358190.1 476 Q9H3G5 476 100% 0 0
NP_001358191.1 476 Q9H3G5 476 100% 0 0
NP_001358192.1 476 Q9H3G5 476 100% 0 0
NP_061902.2 476 Q9H3G5 476 100% 0 0
NP_112601.3 476 Q9H3G5 476 100% 0 0

Chromosomal Locations for CCDS 5419.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28995772 28995882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29030577 29030759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29064061 29064234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29066023 29066121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29071773 29071904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29072301 29072423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29086484 29086550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29092623 29092702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29095084 29095142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29096103 29096217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29112704 29112822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29120893 29121061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGTTGGTGCCATGTGGAAGGTGATTGTTTCGCTGGTCCTGTTGATGCCTGGCCCCTGTGATGGGCTGT
TTCGCTCCCTATACAGAAGTGTTTCCATGCCACCTAAGGGAGACTCAGGACAGCCATTATTTCTCACCCC
TTACATTGAAGCTGGGAAGATCCAAAAAGGAAGAGAATTGAGTTTGGTCGGCCCTTTCCCAGGACTGAAC
ATGAAGAGTTATGCCGGCTTCCTCACCGTGAATAAGACTTACAACAGCAACCTCTTCTTCTGGTTCTTCC
CAGCTCAGATACAGCCAGAAGATGCCCCAGTAGTTCTCTGGCTACAGGGTGGGCCGGGAGGTTCATCCAT
GTTTGGACTCTTTGTGGAACATGGGCCTTATGTTGTCACAAGTAACATGACCTTGCGTGACAGAGACTTC
CCCTGGACCACAACGCTCTCCATGCTTTACATTGACAATCCAGTGGGCACAGGCTTCAGTTTTACTGATG
ATACCCACGGATATGCAGTCAATGAGGACGATGTAGCACGGGATTTATACAGTGCACTAATTCAGTTTTT
CCAGATATTTCCTGAATATAAAAATAATGACTTTTATGTCACTGGGGAGTCTTATGCAGGGAAATATGTG
CCAGCCATTGCACACCTCATCCATTCCCTCAACCCTGTGAGAGAGGTGAAGATCAACCTGAACGGAATTG
CTATTGGAGATGGATATTCTGATCCCGAATCAATTATAGGGGGCTATGCAGAATTCCTGTACCAAATTGG
CTTGTTGGATGAGAAGCAAAAAAAGTACTTCCAGAAGCAGTGCCATGAATGCATAGAACACATCAGGAAG
CAGAACTGGTTTGAGGCCTTTGAAATACTGGATAAACTACTAGATGGCGACTTAACAAGTGATCCTTCTT
ACTTCCAGAATGTTACAGGATGTAGTAATTACTATAACTTTTTGCGGTGCACGGAACCTGAGGATCAGCT
TTACTATGTGAAATTTTTGTCACTCCCAGAGGTGAGACAAGCCATCCACGTGGGGAATCAGACTTTTAAT
GATGGAACTATAGTTGAAAAGTACTTGCGAGAAGATACAGTACAGTCAGTTAAGCCATGGTTAACTGAAA
TCATGAATAATTATAAGGTTCTGATCTACAATGGCCAACTGGACATCATCGTGGCAGCTGCCCTGACAGA
GCGCTCCTTGATGGGCATGGACTGGAAAGGATCCCAGGAATACAAGAAGGCAGAAAAAAAAGTTTGGAAG
ATCTTTAAATCTGACAGTGAAGTGGCTGGTTACATCCGGCAAGCGGGTGACTTCCATCAGGTAATTATTC
GAGGTGGAGGACATATTTTACCCTATGACCAGCCTCTGAGAGCTTTTGACATGATTAATCGATTCATTTA
TGGAAAAGGATGGGATCCTTATGTTGGATAA

Translation (476 aa):
MVGAMWKVIVSLVLLMPGPCDGLFRSLYRSVSMPPKGDSGQPLFLTPYIEAGKIQKGRELSLVGPFPGLN
MKSYAGFLTVNKTYNSNLFFWFFPAQIQPEDAPVVLWLQGGPGGSSMFGLFVEHGPYVVTSNMTLRDRDF
PWTTTLSMLYIDNPVGTGFSFTDDTHGYAVNEDDVARDLYSALIQFFQIFPEYKNNDFYVTGESYAGKYV
PAIAHLIHSLNPVREVKINLNGIAIGDGYSDPESIIGGYAEFLYQIGLLDEKQKKYFQKQCHECIEHIRK
QNWFEAFEILDKLLDGDLTSDPSYFQNVTGCSNYYNFLRCTEPEDQLYYVKFLSLPEVRQAIHVGNQTFN
DGTIVEKYLREDTVQSVKPWLTEIMNNYKVLIYNGQLDIIVAAALTERSLMGMDWKGSQEYKKAEKKVWK
IFKSDSEVAGYIRQAGDFHQVIIRGGGHILPYDQPLRAFDMINRFIYGKGWDPYVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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