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Report for CCDS2967.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2967.1 Public Homo sapiens 3 SLC35A5 24 110 108 CCDS HistoryNCBI Gene:55032Re-query CCDS DB by CCDS ID:2967.1Re-query CCDS DB by GeneID:55032See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2967.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000492406.6 ENSP00000417654.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000492406.6Link to Ensembl Protein Viewer:ENSP00000417654.1Re-query CCDS DB by Nucleotide ID:ENST00000492406Re-query CCDS DB by Protein ID:ENSP00000417654
Original member Current member NCBI NM_001348905.2 NP_001335834.1 Accepted alive Link to Nucleotide Sequence:NM_001348905.2Link to Protein Sequence:NP_001335834.1Re-query CCDS DB by Nucleotide ID:NM_001348905Re-query CCDS DB by Protein ID:NP_001335834Link to BLAST:NP_001335834.1
Original member Current member NCBI NM_001348906.2 NP_001335835.1 Accepted alive Link to Nucleotide Sequence:NM_001348906.2Link to Protein Sequence:NP_001335835.1Re-query CCDS DB by Nucleotide ID:NM_001348906Re-query CCDS DB by Protein ID:NP_001335835Link to BLAST:NP_001335835.1
Original member Current member NCBI NM_001348907.2 NP_001335836.1 Accepted alive Link to Nucleotide Sequence:NM_001348907.2Link to Protein Sequence:NP_001335836.1Re-query CCDS DB by Nucleotide ID:NM_001348907Re-query CCDS DB by Protein ID:NP_001335836Link to BLAST:NP_001335836.1
Original member Current member NCBI NM_017945.5 NP_060415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017945.5Link to Protein Sequence:NP_060415.1Re-query CCDS DB by Nucleotide ID:NM_017945Re-query CCDS DB by Protein ID:NP_060415Link to BLAST:NP_060415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001335834.1 424 Q9BS91 424 100% 0 0
NP_001335835.1 424 Q9BS91 424 100% 0 0
NP_001335836.1 424 Q9BS91 424 100% 0 0
NP_060415.1 424 Q9BS91 424 100% 0 0

Chromosomal Locations for CCDS 2967.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112563404 112563533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112569171 112569269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112570540 112570670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112573889 112573956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112580546 112581326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112582671 112582736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGAAAAACAGTGCTGTAGTCATCCTGTAATATGCTCCTTGTCAACAATGTATACATTCCTGCTAGGTG
CCATATTCATTGCTTTAAGCTCAAGTCGCATCTTACTAGTGAAGTATTCTGCCAATGAAGAAAACAAGTA
TGATTATCTTCCAACTACTGTGAATGTGTGCTCAGAACTGGTGAAGCTAGTTTTCTGTGTGCTTGTGTCA
TTCTGTGTTATAAAGAAAGATCATCAAAGTAGAAATTTGAAATATGCTTCCTGGAAGGAATTCTCTGATT
TCATGAAGTGGTCCATTCCTGCCTTTCTTTATTTCCTGGATAACTTGATTGTCTTCTATGTCCTGTCCTA
TCTTCAACCAGCCATGGCTGTTATCTTCTCAAATTTTAGCATTATAACAACAGCTCTTCTATTCAGGATA
GTGCTGAAGAGGCGTCTAAACTGGATCCAGTGGGCTTCCCTCCTGACTTTATTTTTGTCTATTGTGGCCT
TGACTGCCGGGACTAAAACTTTACAGCACAACTTGGCAGGACGTGGATTTCATCACGATGCCTTTTTCAG
CCCTTCCAATTCCTGCCTTCTTTTCAGAAGTGAGTGTCCCAGAAAAGACAATTGTACAGCAAAGGAATGG
ACTTTTCCTGAAGCTAAATGGAACACCACAGCCAGAGTTTTCAGTCACATCCGTCTTGGCATGGGCCATG
TTCTTATTATAGTCCAGTGTTTTATTTCTTCAATGGCTAATATCTATAATGAAAAGATACTGAAGGAAGG
GAACCAGCTCACTGAAAGCATCTTCATACAGAACAGCAAACTCTATTTCTTTGGCATTCTGTTTAATGGG
CTGACTCTGGGCCTTCAGAGGAGTAACCGTGATCAGATTAAGAACTGTGGATTTTTTTATGGCCACAGTG
CATTTTCAGTAGCCCTTATTTTTGTAACTGCATTCCAGGGCCTTTCAGTGGCTTTCATTCTGAAGTTCCT
GGATAACATGTTCCATGTCTTGATGGCCCAGGTTACCACTGTCATTATCACAACAGTGTCTGTCCTGGTC
TTTGACTTCAGGCCCTCCCTGGAATTTTTCTTGGAAGCCCCATCAGTCCTTCTCTCTATATTTATTTATA
ATGCCAGCAAGCCTCAAGTTCCGGAATACGCACCTAGGCAAGAAAGGATCCGAGATCTAAGTGGCAATCT
TTGGGAGCGTTCCAGTGGGGATGGAGAAGAACTAGAAAGACTTACCAAACCCAAGAGTGATGAGTCAGAT
GAAGATACTTTCTAA

Translation (424 aa):
MEKQCCSHPVICSLSTMYTFLLGAIFIALSSSRILLVKYSANEENKYDYLPTTVNVCSELVKLVFCVLVS
FCVIKKDHQSRNLKYASWKEFSDFMKWSIPAFLYFLDNLIVFYVLSYLQPAMAVIFSNFSIITTALLFRI
VLKRRLNWIQWASLLTLFLSIVALTAGTKTLQHNLAGRGFHHDAFFSPSNSCLLFRSECPRKDNCTAKEW
TFPEAKWNTTARVFSHIRLGMGHVLIIVQCFISSMANIYNEKILKEGNQLTESIFIQNSKLYFFGILFNG
LTLGLQRSNRDQIKNCGFFYGHSAFSVALIFVTAFQGLSVAFILKFLDNMFHVLMAQVTTVIITTVSVLV
FDFRPSLEFFLEAPSVLLSIFIYNASKPQVPEYAPRQERIRDLSGNLWERSSGDGEELERLTKPKSDESD
EDTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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