NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9030.1 Public Homo sapiens 12 MGAT4C 24 110 108 CCDS HistoryNCBI Gene:25834Re-query CCDS DB by CCDS ID:9030.1Re-query CCDS DB by GeneID:25834See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000552808.7 ENSP00000446647.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000552808.7Link to Ensembl Protein Viewer:ENSP00000446647.1Re-query CCDS DB by Nucleotide ID:ENST00000552808Re-query CCDS DB by Protein ID:ENSP00000446647
Original member Current member EBI ENST00000548651.6 ENSP00000447253.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000548651.6Link to Ensembl Protein Viewer:ENSP00000447253.1Re-query CCDS DB by Nucleotide ID:ENST00000548651Re-query CCDS DB by Protein ID:ENSP00000447253
Original member Current member EBI ENST00000620241.5 ENSP00000477650.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620241.5Link to Ensembl Protein Viewer:ENSP00000477650.1Re-query CCDS DB by Nucleotide ID:ENST00000620241Re-query CCDS DB by Protein ID:ENSP00000477650
Original member Current member EBI ENST00000621808.5 ENSP00000478300.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621808.5Link to Ensembl Protein Viewer:ENSP00000478300.1Re-query CCDS DB by Nucleotide ID:ENST00000621808Re-query CCDS DB by Protein ID:ENSP00000478300
Original member Current member EBI ENST00000611864.5 ENSP00000481096.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000611864.5Link to Ensembl Protein Viewer:ENSP00000481096.1Re-query CCDS DB by Nucleotide ID:ENST00000611864Re-query CCDS DB by Protein ID:ENSP00000481096
Original member Current member NCBI NM_001351285.2 NP_001338214.1 Accepted alive Link to Nucleotide Sequence:NM_001351285.2Link to Protein Sequence:NP_001338214.1Re-query CCDS DB by Nucleotide ID:NM_001351285Re-query CCDS DB by Protein ID:NP_001338214Link to BLAST:NP_001338214.1
Original member Current member NCBI NM_001351286.2 NP_001338215.1 Accepted alive Link to Nucleotide Sequence:NM_001351286.2Link to Protein Sequence:NP_001338215.1Re-query CCDS DB by Nucleotide ID:NM_001351286Re-query CCDS DB by Protein ID:NP_001338215Link to BLAST:NP_001338215.1
Original member Current member NCBI NM_001351287.2 NP_001338216.1 Accepted alive Link to Nucleotide Sequence:NM_001351287.2Link to Protein Sequence:NP_001338216.1Re-query CCDS DB by Nucleotide ID:NM_001351287Re-query CCDS DB by Protein ID:NP_001338216Link to BLAST:NP_001338216.1
Original member Current member NCBI NM_001351288.2 NP_001338217.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351288.2Link to Protein Sequence:NP_001338217.1Re-query CCDS DB by Nucleotide ID:NM_001351288Re-query CCDS DB by Protein ID:NP_001338217Link to BLAST:NP_001338217.1
Original member Current member NCBI NM_001351289.2 NP_001338218.1 Accepted alive Link to Nucleotide Sequence:NM_001351289.2Link to Protein Sequence:NP_001338218.1Re-query CCDS DB by Nucleotide ID:NM_001351289Re-query CCDS DB by Protein ID:NP_001338218Link to BLAST:NP_001338218.1
Original member Current member NCBI NM_001351291.2 NP_001338220.1 Accepted alive Link to Nucleotide Sequence:NM_001351291.2Link to Protein Sequence:NP_001338220.1Re-query CCDS DB by Nucleotide ID:NM_001351291Re-query CCDS DB by Protein ID:NP_001338220Link to BLAST:NP_001338220.1
Original member Current member NCBI NM_013244.5 NP_037376.2 Accepted alive Link to Nucleotide Sequence:NM_013244.5Link to Protein Sequence:NP_037376.2Re-query CCDS DB by Nucleotide ID:NM_013244Re-query CCDS DB by Protein ID:NP_037376Link to BLAST:NP_037376.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338214.1 478 Q9UBM8-1 478 100% 0 0
NP_001338215.1 478 Q9UBM8-1 478 100% 0 0
NP_001338216.1 478 Q9UBM8-1 478 100% 0 0
NP_001338217.1 478 Q9UBM8-1 478 100% 0 0
NP_001338218.1 478 Q9UBM8-1 478 100% 0 0
NP_001338220.1 478 Q9UBM8-1 478 100% 0 0
NP_037376.2 478 Q9UBM8-1 478 100% 0 0

Chromosomal Locations for CCDS 9030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 85979289 85980430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85983523 85983670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 85989400 85989546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1437 nt):
ATGTTTAAATTTCATCAAATGAAACATATTTTTGAAATACTTGATAAAATGAGATGCCTGAGAAAACGTT
CTACAGTGTCATTCTTGGGAGTTCTTGTCATTTTTCTCCTTTTTATGAACTTGTACATTGAAGATAGCTA
TGTTCTGGAAGGAGACAAACAACTTATAAGGGAAACATCCACACATCAACTGAATTCAGAACGCTATGTT
CATACTTTCAAGGATTTATCTAATTTCTCAGGAGCCATAAATGTCACCTATCGCTACCTAGCTGCCACAC
CTTTACAAAGAAAGCGGTATCTTACAATTGGACTTTCTTCAGTAAAGCGAAAAAAAGGAAACTATTTACT
TGAGACAATTAAGTCAATTTTTGAGCAATCCAGCTATGAAGAGCTGAAGGAAATTTCAGTGGTGGTTCAC
CTAGCAGACTTTAATTCTTCCTGGCGTGATGCCATGGTCCAGGATATTACACAGAAATTTGCGCACCATA
TTATTGCAGGAAGATTAATGGTTATACATGCTCCAGAGGAGTATTACCCAATCCTAGATGGCCTTAAAAG
AAATTACAATGATCCAGAAGATAGAGTCAAATTTCGTTCCAAGCAAAATGTAGATTATGCTTTTCTGCTT
AATTTTTGTGCCAATACTTCAGACTATTATGTAATGCTTGAAGATGATGTTCGATGTTCAAAAAATTTCT
TAACTGCCATCAAGAAAGTCATTGCATCCCTAGAAGGAACTTACTGGGTAACTCTTGAATTCTCTAAGCT
TGGCTACATTGGTAAACTCTATCATTCTCATGATCTCCCACGTTTGGCCCATTTTTTATTAATGTTTTAT
CAAGAAATGCCTTGTGATTGGCTATTGACTCATTTCCGTGGTCTGTTGGCTCAGAAAAATGTGATCCGTT
TTAAACCATCTCTCTTTCAGCACATGGGCTATTATTCATCATACAAAGGGACGGAGAATAAGCTGAAGGA
TGATGATTTTGAAGAGGAGTCATTTGACATTCCTGATAACCCCCCTGCAAGTCTGTACACCAACATGAAT
GTGTTTGAAAATTATGAAGCAAGCAAGGCTTACAGTAGTGTTGATGAGTACTTTTGGGGGAAACCACCTT
CAACAGGAGATGTTTTTGTGATTGTATTTGAAAATCCAATTATAATAAAAAAAATTAAAGTAAATACTGG
AACAGAAGATCGGCAAAATGATATTTTGCATCATGGAGCCCTAGATGTTGGGGAAAACGTTATGCCTAGC
AAACAAAGGAGACAATGTTCTACTTACTTAAGACTAGGAGAATTCAAAAATGGAAACTTTGAAATGTCAG
GTGTAAATCAAAAAATTCCATTTGATATACATTGTATGAGGATATATGTCACCAAAACACAAAAGGAATG
GCTAATTATTAGGAGTATTAGCATTTGGACTTCTTAG

Translation (478 aa):
MFKFHQMKHIFEILDKMRCLRKRSTVSFLGVLVIFLLFMNLYIEDSYVLEGDKQLIRETSTHQLNSERYV
HTFKDLSNFSGAINVTYRYLAATPLQRKRYLTIGLSSVKRKKGNYLLETIKSIFEQSSYEELKEISVVVH
LADFNSSWRDAMVQDITQKFAHHIIAGRLMVIHAPEEYYPILDGLKRNYNDPEDRVKFRSKQNVDYAFLL
NFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDLPRLAHFLLMFY
QEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDDFEEESFDIPDNPPASLYTNMN
VFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFENPIIIKKIKVNTGTEDRQNDILHHGALDVGENVMPS
KQRRQCSTYLRLGEFKNGNFEMSGVNQKIPFDIHCMRIYVTKTQKEWLIIRSISIWTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH