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Report for CCDS47352.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47352.1 Public Homo sapiens 5 ZNF879 24 110 108 CCDS HistoryNCBI Gene:345462Re-query CCDS DB by CCDS ID:47352.1Re-query CCDS DB by GeneID:345462See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47352.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000444149.7 ENSP00000414887.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000444149.7Link to Ensembl Protein Viewer:ENSP00000414887.2Re-query CCDS DB by Nucleotide ID:ENST00000444149Re-query CCDS DB by Protein ID:ENSP00000414887
Original member Current member NCBI NM_001136116.3 NP_001129588.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001136116.3Link to Protein Sequence:NP_001129588.1Re-query CCDS DB by Nucleotide ID:NM_001136116Re-query CCDS DB by Protein ID:NP_001129588Link to BLAST:NP_001129588.1
Original member Current member NCBI NM_001353372.2 NP_001340301.1 Accepted alive Link to Nucleotide Sequence:NM_001353372.2Link to Protein Sequence:NP_001340301.1Re-query CCDS DB by Nucleotide ID:NM_001353372Re-query CCDS DB by Protein ID:NP_001340301Link to BLAST:NP_001340301.1
Original member Current member NCBI NM_001353373.2 NP_001340302.1 Accepted alive Link to Nucleotide Sequence:NM_001353373.2Link to Protein Sequence:NP_001340302.1Re-query CCDS DB by Nucleotide ID:NM_001353373Re-query CCDS DB by Protein ID:NP_001340302Link to BLAST:NP_001340302.1
Original member Current member NCBI NM_001353374.2 NP_001340303.1 Accepted alive Link to Nucleotide Sequence:NM_001353374.2Link to Protein Sequence:NP_001340303.1Re-query CCDS DB by Nucleotide ID:NM_001353374Re-query CCDS DB by Protein ID:NP_001340303Link to BLAST:NP_001340303.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129588.1 563 B4DU55 563 100% 0 0
NP_001340301.1 563 B4DU55 563 100% 0 0
NP_001340302.1 563 B4DU55 563 100% 0 0
NP_001340303.1 563 B4DU55 563 100% 0 0

Chromosomal Locations for CCDS 47352.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 179025005 179025037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179027473 179027599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179028032 179028127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 179032205 179033640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1692 nt):
ATGGCAAGGAGGTTGCTGCCAGCCCATGTACAGGAGTCCGTGACGTTCAGGGATGTGGCCGTGTTCTTCA
GCCAGGACGAGTGGTTGCACCTGGACTCTGCCCAGAGAGCCTTGTACCGGGAGGTGATGCTGGAGAACTA
CAGCATCCTGGTCTCACTGGGGATTCTCTTTTCCAAGCCAAAGGTCATCTCCCAGTTAGAGCAAGGAGAA
GACCCCTGGATGGTGGAGAGTGGAGTTCCCCAAGGCGCACATCTCGGATGGGAAAGCTTGTTTGGAACCA
TAGTTTCTAAAGAAGAAAATCAGGAAGTCATGAAAAAACTCATAATTGATGGCACATTTGACTTCAAGTT
GGAGAAGACCTACATAAATGAAGATAAGTTAGAGAAGCAACAAGGCAAAAAGAACAGACTTTTCAGTAAA
GTGTTAGTTACCATCAAAAAAGTCTACATGAAGGAGAGGAGCTTTAAAGGTGTTGAATTTGGGAAAAATC
TTGGTCTAAAATCATCGCTTATTAGAAAACCGAGAATAGTTTCCAGAGGAAGGAGACCCCGTTCACAGCA
GTATTCAGTTCTCTTTAAACAACTGGGGGTCAACACAGTGCGTAAATGTTATAAATGTAATATCTGTGGG
AAAATCTTCCTCCACAGTTCCTCCCTGAGTAAACACCAGAGAATCCACACTGGAGAGAAGCTCTATAAAT
GTAAGGAATGTAGGAAAGCCTTCAGCCAAAGCTCATCCCTAACTCAGCACTTGAGGGTTCATACAGGAGA
GAAACCTTATATATGTAGTGAATGTGGAAAAGCCTTCAGTTTCACCACATCTCTTATTGGACACCAGAGA
ATGCATACTGGAGAGAGACCTTATAAATGCAAGGAATGTGGAAAAACATTTAAAGGTAGTTCATCTCTTA
ATAATCACCAGCGAATTCACACAGGAGAGAAGCCCTATAAGTGTAATGAATGTGGGAGGGCCTTCAGTCA
GTGCTCATCTCTCATTCAGCACCACAGAATTCATACTGGGGAGAAACCGTATGAATGTACTCAGTGTGGG
AAAGCCTTCACTTCAATATCGCGGCTAAGTAGGCACCATCGAATTCATACTGGAGAGAAACCCTTTCATT
GTAACGAGTGTGGAAAAGTATTCAGCTATCACTCAGCCCTTATCATACATCAGAGAATTCACACTGGTGA
GAAACCATATGCATGCAAAGAATGTGGGAAAGCCTTCAGCCAAAGCTCAGCTCTCATACAACATCAAAGA
ATTCACACTGGAGAAAAACCCTACAAATGTAATGAATGTGGGAAAGCCTTCTCTTGGATTTCACGGCTTA
ATATACATCACAGAATTCACACTGGAGAGAAACCATATAATTGTAAGGAATGTGGAAAAGCCTTCAGTTC
CCACTCAGGCGTTAATACTCATCGAAAAATTCATACTGGAGAAAAACCTTATAAATGTAATGACTGTGAG
AAAGCCTTCAACCAAAGCTCAGCTCTAATTCAGCACCAGAGAATTCATACTGGAGAGAAACCATATAATT
GTAAAGTGTGTGGGAAAGCCTTCAGACAGAGTTCATCCCTTATGACACACATGAGAATTCATACAGGGGA
AAAACCTTATAAATGTAAAGAATGTGGGAAGGCTTTTAGTCAGAGCTCATCTCTTACTAATCATCAAAGG
ACTCATAATTGA

Translation (563 aa):
MARRLLPAHVQESVTFRDVAVFFSQDEWLHLDSAQRALYREVMLENYSILVSLGILFSKPKVISQLEQGE
DPWMVESGVPQGAHLGWESLFGTIVSKEENQEVMKKLIIDGTFDFKLEKTYINEDKLEKQQGKKNRLFSK
VLVTIKKVYMKERSFKGVEFGKNLGLKSSLIRKPRIVSRGRRPRSQQYSVLFKQLGVNTVRKCYKCNICG
KIFLHSSSLSKHQRIHTGEKLYKCKECRKAFSQSSSLTQHLRVHTGEKPYICSECGKAFSFTTSLIGHQR
MHTGERPYKCKECGKTFKGSSSLNNHQRIHTGEKPYKCNECGRAFSQCSSLIQHHRIHTGEKPYECTQCG
KAFTSISRLSRHHRIHTGEKPFHCNECGKVFSYHSALIIHQRIHTGEKPYACKECGKAFSQSSALIQHQR
IHTGEKPYKCNECGKAFSWISRLNIHHRIHTGEKPYNCKECGKAFSSHSGVNTHRKIHTGEKPYKCNDCE
KAFNQSSALIQHQRIHTGEKPYNCKVCGKAFRQSSSLMTHMRIHTGEKPYKCKECGKAFSQSSSLTNHQR
THN


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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