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Report for CCDS54696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
54696.1 Public Homo sapiens 3 IL1RAP 24 110 108 CCDS HistoryNCBI Gene:3556Re-query CCDS DB by CCDS ID:54696.1Re-query CCDS DB by GeneID:3556See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 54696.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317757.7 ENSP00000314807.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000317757.7Link to Ensembl Protein Viewer:ENSP00000314807.3Re-query CCDS DB by Nucleotide ID:ENST00000317757Re-query CCDS DB by Protein ID:ENSP00000314807
Original member Current member EBI ENST00000443369.6 ENSP00000408893.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000443369.6Link to Ensembl Protein Viewer:ENSP00000408893.2Re-query CCDS DB by Nucleotide ID:ENST00000443369Re-query CCDS DB by Protein ID:ENSP00000408893
Original member Current member NCBI NM_001167931.2 NP_001161403.1 Accepted alive Link to Nucleotide Sequence:NM_001167931.2Link to Protein Sequence:NP_001161403.1Re-query CCDS DB by Nucleotide ID:NM_001167931Re-query CCDS DB by Protein ID:NP_001161403Link to BLAST:NP_001161403.1
Original member Current member NCBI NM_001364879.1 NP_001351808.1 Accepted alive Link to Nucleotide Sequence:NM_001364879.1Link to Protein Sequence:NP_001351808.1Re-query CCDS DB by Nucleotide ID:NM_001364879Re-query CCDS DB by Protein ID:NP_001351808Link to BLAST:NP_001351808.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161403.1 687 Q9NPH3-5 687 100% 0 0
NP_001351808.1 687 Q9NPH3-5 687 100% 0 0

Chromosomal Locations for CCDS 54696.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 190564290 190564353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190604128 190604413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190608995 190609181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190620275 190620440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190623344 190623415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190627323 190627449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190629350 190629498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190644248 190644397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190645699 190645842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 190655889 190656607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGACACTTCTGTGGTGTGTAGTGAGTCTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGAACGCT
GCGATGACTGGGGACTAGACACCATGAGGCAAATCCAAGTGTTTGAAGATGAGCCAGCTCGCATCAAGTG
CCCACTCTTTGAACACTTCTTGAAATTCAACTACAGCACAGCCCATTCAGCTGGCCTTACTCTGATCTGG
TATTGGACTAGGCAGGACCGGGACCTTGAGGAGCCAATTAACTTCCGCCTCCCCGAGAACCGCATTAGTA
AGGAGAAAGATGTGCTGTGGTTCCGGCCCACTCTCCTCAATGACACTGGCAACTATACCTGCATGTTAAG
GAACACTACATATTGCAGCAAAGTTGCATTTCCCTTGGAAGTTGTTCAAAAAGACAGCTGTTTCAATTCC
CCCATGAAACTCCCAGTGCATAAACTGTATATAGAATATGGCATTCAGAGGATCACTTGTCCAAATGTAG
ATGGATATTTTCCTTCCAGTGTCAAACCGACTATCACTTGGTATATGGGCTGTTATAAAATACAGAATTT
TAATAATGTAATACCCGAAGGTATGAACTTGAGTTTCCTCATTGCCTTAATTTCAAATAATGGAAATTAC
ACATGTGTTGTTACATATCCAGAAAATGGACGTACGTTTCATCTCACCAGGACTCTGACTGTAAAGGTAG
TAGGCTCTCCAAAAAATGCAGTGCCCCCTGTGATCCATTCACCTAATGATCATGTGGTCTATGAGAAAGA
ACCAGGAGAGGAGCTACTCATTCCCTGTACGGTCTATTTTAGTTTTCTGATGGATTCTCGCAATGAGGTT
TGGTGGACCATTGATGGAAAAAAACCTGATGACATCACTATTGATGTCACCATTAACGAAAGTATAAGTC
ATAGTAGAACAGAAGATGAAACAAGAACTCAGATTTTGAGCATCAAGAAAGTTACCTCTGAGGATCTCAA
GCGCAGCTATGTCTGTCATGCTAGAAGTGCCAAAGGCGAAGTTGCCAAAGCAGCCAAGGTGAAGCAGAAA
GTGCCAGCTCCAAGATACACAGTGGAACTGGCTTGTGGTTTTGGAGCCACAGTCCTGCTAGTGGTGATTC
TCATTGTTGTTTACCATGTTTACTGGCTAGAGATGGTCCTATTTTACCGGGCTCATTTTGGAACAGATGA
AACCATTTTAGATGGAAAAGAGTATGATATTTATGTATCCTATGCAAGGAATGCGGAAGAAGAAGAATTT
GTATTACTGACCCTCCGTGGAGTTTTGGAGAATGAATTTGGATACAAGCTGTGCATCTTTGACCGAGACA
GTCTGCCTGGGGGAAATACAGTGGAAGCAGTTTTTGATTTCATTCAGAGAAGCAGAAGGATGATTGTTGT
TCTGAGCCCTGACTATGTGACAGAAAAGAGCATCAGCATGCTGGAGTTTAAACTGGGTGTCATGTGCCAG
AACTCCATTGCCACCAAGCTCATTGTGGTTGAGTACCGTCCCCTTGAGCACCCGCACCCAGGCATTCTTC
AGCTCAAAGAGTCTGTGTCTTTTGTGAGCTGGAAGGGAGAAAAGTCCAAACATTCTGGCTCTAAATTCTG
GAAAGCTTTGCGGTTGGCTCTTCCCCTGAGAAGTCTGAGTGCCAGTTCTGGCTGGAATGAGAGCTGCTCT
TCCCAGTCTGACATCAGTCTGGATCACGTTCAAAGGAGGAGAAGTCGTTTGAAAGAGCCCCCAGAACTTC
AGAGCTCAGAGAGGGCTGCAGGTAGCCCTCCAGCCCCAGGCACAATGTCCAAGCACCGAGGGAAGTCCTC
CGCCACCTGCCGCTGTTGTGTCACCTACTGTGAAGGAGAGAATCACCTTAGGAACAAGAGCCGGGCAGAG
ATTCATAACCAGCCCCAGTGGGAGACACACCTCTGTAAGCCTGTTCCCCAAGAGTCAGAAACTCAATGGA
TACAAAATGGCACCAGATTGGAACCCCCTGCTCCCCAGATCTCAGCCCTTGCTCTTCATCATTTCACGGA
CTTATCCAATAACAACGACTTTTATATCCTATAA

Translation (687 aa):
MTLLWCVVSLYFYGILQSDASERCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIW
YWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNS
PMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNY
TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV
WWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK
VPAPRYTVELACGFGATVLLVVILIVVYHVYWLEMVLFYRAHFGTDETILDGKEYDIYVSYARNAEEEEF
VLLTLRGVLENEFGYKLCIFDRDSLPGGNTVEAVFDFIQRSRRMIVVLSPDYVTEKSISMLEFKLGVMCQ
NSIATKLIVVEYRPLEHPHPGILQLKESVSFVSWKGEKSKHSGSKFWKALRLALPLRSLSASSGWNESCS
SQSDISLDHVQRRRSRLKEPPELQSSERAAGSPPAPGTMSKHRGKSSATCRCCVTYCEGENHLRNKSRAE
IHNQPQWETHLCKPVPQESETQWIQNGTRLEPPAPQISALALHHFTDLSNNNDFYIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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